Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   KHW12_RS03240 Genome accession   NZ_CP074409
Coordinates   739506..741098 (-) Length   530 a.a.
NCBI ID   WP_016567133.1    Uniprot ID   A0AB74AAW4
Organism   Pseudomonas syringae strain KF529     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 734506..746098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHW12_RS03225 (KHW12_03225) - 736503..736910 (+) 408 WP_003392819.1 type IV pilin protein -
  KHW12_RS03230 (KHW12_03230) thiO 736936..738039 (+) 1104 WP_003392818.1 glycine oxidase ThiO -
  KHW12_RS03235 (KHW12_03235) pilR 738166..739503 (-) 1338 WP_003344575.1 sigma-54 dependent transcriptional regulator Regulator
  KHW12_RS03240 (KHW12_03240) pilS 739506..741098 (-) 1593 WP_016567133.1 ATP-binding protein Regulator
  KHW12_RS03245 (KHW12_03245) - 741088..741327 (-) 240 WP_057445553.1 PP0621 family protein -
  KHW12_RS03250 (KHW12_03250) - 741448..742470 (-) 1023 WP_003344571.1 outer membrane protein assembly factor BamD -
  KHW12_RS03255 (KHW12_03255) rluD 742620..743582 (+) 963 WP_002551999.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KHW12_RS03260 (KHW12_03260) pgeF 743579..744307 (+) 729 WP_032661019.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58030.93 Da        Isoelectric Point: 6.8620

>NTDB_id=564650 KHW12_RS03240 WP_016567133.1 739506..741098(-) (pilS) [Pseudomonas syringae strain KF529]
MTADSPSLVSPQAQRILRLYHLYRLTIGVVLVLLISSSLETELLQLANPNLFRSGCWLYLVFNILVVVLLERPSRQAQFF
GLAMTDAIMLSALFYAAGGPSSGIGNLLIASVAISNVLLRGRIGLLIAAVSAIGIIYLTFYISFGTPSVSNDYVQAGSLG
ALCFAAALLVQALTARMQVSEVLAEQRAADVDSLEALNALILQRMRTGILVLDANHQVLLANQSALHLLSQEQLVGQMID
TCSPQLVERLRQWLVNPIMVPRSITTAPVGLVLQPSFATLNRGDQRQTLVFLEDLSQIAHQAQQLKLAALGRLTAGIAHE
IRNPLGAVSHAAQLLNESEELSAADRRLGQIIHEQSGRIDRVIENVLQLSRRREAQPELLDLKTWLEHFVAEFRSSTAPN
QAIHVDISPGTLTTRMDSGQLTQIMTNLVQNGLRYSGKNHPSAQVWLKLHNEPRSDLPTLEVLDDGPGVSEQHLSKIFEP
FFTTESKGTGLGLYLSRELCESNQAHLEYAPRPTGGSCLRITFAHPFKTS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=564650 KHW12_RS03240 WP_016567133.1 739506..741098(-) (pilS) [Pseudomonas syringae strain KF529]
GTGACCGCTGATTCACCGTCCCTTGTCAGCCCGCAGGCACAGCGGATTCTGCGGCTGTACCACCTTTATCGACTGACCAT
CGGCGTCGTACTGGTGCTGTTGATTTCCAGCAGCCTGGAAACCGAGCTGCTGCAACTGGCCAACCCGAACCTGTTCCGCT
CGGGCTGCTGGTTGTATCTGGTGTTCAACATTCTGGTCGTCGTGCTGCTGGAACGCCCCAGCCGTCAGGCACAGTTTTTC
GGCCTGGCGATGACTGACGCGATCATGCTCTCCGCGCTGTTCTATGCAGCGGGCGGGCCTTCAAGCGGTATCGGCAACCT
GTTGATTGCCTCGGTGGCGATCAGCAACGTGTTGCTGCGCGGCCGTATCGGCTTGTTGATCGCTGCGGTTTCGGCCATCG
GCATCATCTACCTGACGTTCTATATCAGCTTCGGCACACCCTCGGTCTCCAACGACTACGTGCAGGCTGGCTCGCTGGGC
GCCTTATGCTTCGCCGCCGCCCTGCTGGTGCAGGCGCTGACAGCCCGCATGCAGGTCAGCGAGGTACTGGCCGAACAGCG
CGCAGCGGATGTCGACAGCCTCGAAGCACTCAACGCACTCATTTTGCAGCGCATGCGTACCGGCATTCTGGTGCTGGACG
CCAATCACCAGGTGCTGCTGGCCAACCAGAGTGCCTTGCACCTGCTGAGCCAGGAGCAACTGGTCGGCCAGATGATCGAC
ACCTGCTCGCCGCAGCTGGTTGAACGCCTGCGCCAGTGGCTCGTCAATCCGATCATGGTGCCGCGCAGTATCACCACCGC
CCCCGTCGGGCTGGTACTGCAACCGAGCTTTGCCACACTCAACCGTGGCGATCAGCGTCAGACGCTGGTTTTTCTCGAAG
ACCTGTCGCAGATCGCCCATCAGGCGCAGCAGCTCAAGCTCGCCGCACTGGGACGCCTGACCGCCGGGATTGCCCATGAG
ATACGCAACCCGCTGGGCGCCGTCAGTCATGCGGCTCAACTGCTTAATGAATCGGAAGAGCTCAGTGCAGCGGATCGACG
CCTGGGGCAGATCATTCATGAGCAGTCGGGGCGCATTGATCGGGTCATCGAAAATGTCCTGCAGCTGTCGCGCAGACGCG
AGGCGCAACCCGAACTGCTCGATCTGAAAACCTGGCTGGAACACTTTGTCGCTGAATTTCGCAGCTCCACAGCGCCCAAT
CAGGCGATTCATGTCGACATCAGCCCCGGCACGCTGACAACCCGCATGGATTCTGGACAGTTGACGCAGATCATGACCAA
CCTGGTGCAGAACGGCCTGCGCTACAGCGGCAAGAATCATCCGTCAGCGCAGGTCTGGCTGAAACTGCACAATGAACCGA
GAAGCGATTTGCCTACGCTGGAAGTGCTGGACGATGGGCCGGGGGTCAGCGAGCAACACCTGAGCAAGATCTTCGAACCG
TTTTTCACCACAGAAAGCAAAGGCACCGGCCTTGGTCTATATCTGTCACGTGAACTGTGCGAAAGCAATCAGGCGCATCT
GGAATATGCGCCCCGCCCCACGGGTGGCAGCTGCCTGCGCATTACCTTCGCCCACCCGTTCAAGACGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

61.017

100

0.611