Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MCS25_RS01275 Genome accession   NZ_CP092048
Coordinates   303981..304451 (+) Length   156 a.a.
NCBI ID   WP_010955965.1    Uniprot ID   Q7MXD2
Organism   Porphyromonas gingivalis strain W50     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 298981..309451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MCS25_RS01255 (MCS25_01255) argS 299239..301032 (+) 1794 WP_005874502.1 arginine--tRNA ligase -
  MCS25_RS01260 (MCS25_01260) mnmA 301037..302122 (+) 1086 WP_005874480.1 tRNA 2-thiouridine(34) synthase MnmA -
  MCS25_RS01265 (MCS25_01265) - 302167..302931 (+) 765 WP_005874493.1 exodeoxyribonuclease III -
  MCS25_RS01270 (MCS25_01270) - 303004..303930 (+) 927 WP_005874484.1 hydrogen peroxide-inducible genes activator -
  MCS25_RS01275 (MCS25_01275) ssb 303981..304451 (+) 471 WP_010955965.1 single-stranded DNA-binding protein Machinery gene
  MCS25_RS01280 (MCS25_01280) gldE 304469..305797 (+) 1329 WP_005874499.1 gliding motility-associated protein GldE -
  MCS25_RS01285 (MCS25_01285) - 305833..306429 (+) 597 WP_005874504.1 4'-phosphopantetheinyl transferase superfamily protein -
  MCS25_RS01290 (MCS25_01290) - 307044..307553 (-) 510 WP_005874471.1 co-chaperone YbbN -
  MCS25_RS01295 (MCS25_01295) - 307691..308818 (-) 1128 WP_004583919.1 hypothetical protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17533.46 Da        Isoelectric Point: 5.9755

>NTDB_id=564523 MCS25_RS01275 WP_010955965.1 303981..304451(+) (ssb) [Porphyromonas gingivalis strain W50]
MSLNKIILIGRTGKDPEIRYFDSNSAVANFSLATSERGYKLANGTEVPERTEWHNVVAYRELAIFAEKWIKKGSLLYVEG
KIRYRTYVDNTGVRRQVTEILAEKINFFESGSSNRDESRTSQTPSSTQDTTPLASSSSVRDTAKEESSEPPSDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=564523 MCS25_RS01275 WP_010955965.1 303981..304451(+) (ssb) [Porphyromonas gingivalis strain W50]
ATGTCTCTGAATAAAATCATCTTGATAGGCCGTACGGGCAAGGATCCCGAGATTCGGTATTTCGATAGCAATTCGGCTGT
CGCAAACTTTTCGCTGGCTACTTCCGAGCGAGGCTACAAGCTGGCCAATGGCACTGAAGTGCCGGAGCGAACGGAATGGC
ATAATGTGGTTGCCTATCGCGAGTTGGCCATTTTTGCCGAGAAGTGGATCAAGAAAGGGAGTCTCCTATATGTCGAAGGA
AAAATCCGCTACCGCACGTATGTAGACAATACAGGGGTTCGTCGGCAAGTGACGGAAATCCTTGCCGAGAAAATCAACTT
TTTTGAAAGCGGTTCCTCCAATCGAGACGAAAGCAGAACTTCACAGACACCTTCATCGACTCAAGATACGACGCCCCTCG
CGTCTTCTTCATCCGTCCGTGATACGGCAAAAGAAGAAAGCTCGGAACCTCCGTCCGACCTTCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(3-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7MXD2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

34.483

100

0.385
  ssb Neisseria gonorrhoeae MS11

47.154

78.846

0.372