Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KG087_RS00035 Genome accession   NZ_CP074379
Coordinates   4924..5517 (+) Length   197 a.a.
NCBI ID   WP_010490295.1    Uniprot ID   A0AAN1C5F0
Organism   Lacticaseibacillus zeae strain FBL8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1..10517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KG087_RS00010 (KG087_00010) - 1645..2001 (-) 357 WP_003571843.1 PTS sugar transporter subunit IIC -
  KG087_RS00015 (KG087_00015) - 2119..2906 (+) 788 Protein_2 IS5 family transposase -
  KG087_RS00020 (KG087_00020) - 2975..3898 (+) 924 WP_249481750.1 MFS transporter -
  KG087_RS00025 (KG087_00025) ssb 4040..4471 (+) 432 WP_010490299.1 single-stranded DNA-binding protein -
  KG087_RS00030 (KG087_00030) rpsF 4598..4894 (+) 297 WP_010490297.1 30S ribosomal protein S6 -
  KG087_RS00035 (KG087_00035) ssb 4924..5517 (+) 594 WP_010490295.1 single-stranded DNA-binding protein Machinery gene
  KG087_RS00040 (KG087_00040) rpsR 5607..5843 (+) 237 WP_003568467.1 30S ribosomal protein S18 -
  KG087_RS00045 (KG087_00045) - 5926..6432 (-) 507 WP_010490256.1 type 1 glutamine amidotransferase domain-containing protein -
  KG087_RS00050 (KG087_00050) - 6790..8268 (+) 1479 WP_010490254.1 cytochrome ubiquinol oxidase subunit I -
  KG087_RS00055 (KG087_00055) cydB 8261..9280 (+) 1020 WP_213449887.1 cytochrome d ubiquinol oxidase subunit II -
  KG087_RS00060 (KG087_00060) - 9426..9620 (+) 195 WP_010490250.1 hypothetical protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21090.81 Da        Isoelectric Point: 4.9056

>NTDB_id=564482 KG087_RS00035 WP_010490295.1 4924..5517(+) (ssb) [Lacticaseibacillus zeae strain FBL8]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSLVGIEGHIQTR
SYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQQPQNPPSFGSQSAPNNAPSSNPG
QNPAAGQSQGNNGNAANPDPFANNGKPIDISDDDLPF

Nucleotide


Download         Length: 594 bp        

>NTDB_id=564482 KG087_RS00035 WP_010490295.1 4924..5517(+) (ssb) [Lacticaseibacillus zeae strain FBL8]
ATGCTTAACAGTGTTGCATTGACAGGTCGTTTAACCAGAGATGTTGACTTACGCTATACGCAAAGCGGTACAGCTGTCGG
TTCATTCACTTTGGCCGTTGATCGCCAGTTCCGCAGTGCAAACGGTGAACGGGAAACCGACTTTATCAATTGTGTGATCT
GGCGTAAGTCAGCGGAGAATTTCGCAAACTTCACCAAGAAAGGCTCACTGGTCGGGATTGAAGGACATATTCAGACGCGT
TCTTACGATAATGCGCAAGGGCAGAAAGTCTATGTGACCGAAGTCGTCGTTGAGAACTTTGCATTGCTGGAATCACGGGC
AACGACACAACAACGACCGTCTGAACCTGCGAATCCCGCTGGCCAAGGCAACCAGAATTACGGCGGTGGGCAGCAGTTTG
GTAATAACCAGCAGCCGCAAAACCCACCTAGCTTTGGTTCCCAAAGCGCCCCGAACAATGCACCATCATCGAATCCGGGT
CAAAACCCGGCAGCAGGTCAAAGCCAAGGCAACAACGGCAATGCTGCTAATCCCGATCCTTTTGCCAATAATGGTAAACC
GATCGATATTTCCGATGATGATCTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.406

100

0.604
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.5

100

0.492