Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KGS74_RS09180 Genome accession   NZ_CP074377
Coordinates   1951043..1951636 (-) Length   197 a.a.
NCBI ID   WP_049171979.1    Uniprot ID   -
Organism   Lacticaseibacillus casei strain FBL6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1946043..1956636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KGS74_RS09150 (KGS74_09150) - 1946188..1946406 (-) 219 WP_049171984.1 Blp family class II bacteriocin -
  KGS74_RS09155 (KGS74_09155) - 1946851..1947045 (-) 195 WP_010490250.1 hypothetical protein -
  KGS74_RS09160 (KGS74_09160) cydB 1947283..1948302 (-) 1020 WP_010490252.1 cytochrome d ubiquinol oxidase subunit II -
  KGS74_RS09165 (KGS74_09165) - 1948295..1949773 (-) 1479 WP_049171981.1 cytochrome ubiquinol oxidase subunit I -
  KGS74_RS09170 (KGS74_09170) - 1950131..1950637 (+) 507 WP_025013654.1 type 1 glutamine amidotransferase domain-containing protein -
  KGS74_RS09175 (KGS74_09175) rpsR 1950717..1950953 (-) 237 WP_003568467.1 30S ribosomal protein S18 -
  KGS74_RS09180 (KGS74_09180) ssb 1951043..1951636 (-) 594 WP_049171979.1 single-stranded DNA-binding protein Machinery gene
  KGS74_RS09185 (KGS74_09185) rpsF 1951666..1951962 (-) 297 WP_010490297.1 30S ribosomal protein S6 -
  KGS74_RS09190 (KGS74_09190) ssb 1952089..1952520 (-) 432 WP_049171976.1 single-stranded DNA-binding protein -
  KGS74_RS09195 (KGS74_09195) gyrA 1952701..1955331 (-) 2631 WP_049171973.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21080.78 Da        Isoelectric Point: 4.9056

>NTDB_id=564442 KGS74_RS09180 WP_049171979.1 1951043..1951636(-) (ssb) [Lacticaseibacillus casei strain FBL6]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSLVGIEGHIQTR
SYDNAQGQKVYVTEVVVENFALLESRATTQQRPSESANPAGQGNQNYGGGQQFGNNQQPQNPPSFGSQSAPNNAPSSNPG
QNPAAGQSQGNNGNAANPDPFANNGKPIDISDDDLPF

Nucleotide


Download         Length: 594 bp        

>NTDB_id=564442 KGS74_RS09180 WP_049171979.1 1951043..1951636(-) (ssb) [Lacticaseibacillus casei strain FBL6]
ATGCTTAACAGTGTTGCATTGACAGGTCGTTTAACCAGAGATGTTGACTTGCGCTATACGCAAAGCGGTACAGCTGTCGG
TTCATTCACTTTGGCCGTTGATCGCCAGTTCCGCAGTGCAAACGGTGAACGGGAAACCGACTTTATCAATTGTGTGATCT
GGCGTAAGTCAGCGGAGAATTTCGCAAACTTCACCAAGAAAGGCTCACTGGTCGGGATTGAAGGACACATTCAGACGCGT
TCTTACGATAATGCGCAAGGGCAGAAAGTCTATGTGACCGAAGTCGTCGTTGAGAACTTTGCATTGCTGGAATCACGGGC
AACGACACAACAACGGCCGTCCGAATCTGCGAATCCCGCTGGCCAAGGCAACCAGAATTATGGCGGTGGGCAGCAGTTTG
GTAATAACCAGCAGCCGCAAAACCCACCTAGCTTTGGTTCCCAAAGCGCCCCGAACAATGCACCATCATCGAATCCGGGC
CAAAACCCGGCAGCAGGTCAAAGCCAAGGCAACAATGGCAATGCTGCTAATCCCGATCCTTTTGCCAATAATGGTAAACC
GATCGATATTTCCGATGATGATCTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.406

100

0.604
  ssbA Bacillus subtilis subsp. subtilis str. 168

48

100

0.487