Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   KGS74_RS07950 Genome accession   NZ_CP074377
Coordinates   1689069..1690868 (+) Length   599 a.a.
NCBI ID   WP_049170439.1    Uniprot ID   -
Organism   Lacticaseibacillus casei strain FBL6     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1684069..1695868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KGS74_RS07935 (KGS74_07935) - 1685053..1685736 (+) 684 WP_049170464.1 hydrolase -
  KGS74_RS07940 (KGS74_07940) brnQ 1686288..1687667 (+) 1380 WP_049170461.1 branched-chain amino acid transport system II carrier protein -
  KGS74_RS07945 (KGS74_07945) - 1687846..1688940 (-) 1095 WP_047106504.1 LCP family protein -
  KGS74_RS07950 (KGS74_07950) pepF 1689069..1690868 (+) 1800 WP_049170439.1 oligoendopeptidase F Regulator
  KGS74_RS07955 (KGS74_07955) - 1690865..1691746 (+) 882 WP_049170436.1 NAD(P)-dependent oxidoreductase -
  KGS74_RS07960 (KGS74_07960) - 1691743..1692591 (+) 849 WP_049170433.1 metallophosphoesterase family protein -
  KGS74_RS07965 (KGS74_07965) - 1693012..1693809 (-) 798 WP_010489770.1 metal ABC transporter permease -
  KGS74_RS07970 (KGS74_07970) - 1693806..1694525 (-) 720 WP_049169211.1 ATP-binding cassette domain-containing protein -
  KGS74_RS07975 (KGS74_07975) - 1694599..1694943 (-) 345 WP_025013473.1 hypothetical protein -

Sequence

Protein


Download         Length: 599 a.a.        Molecular weight: 67075.14 Da        Isoelectric Point: 5.6489

>NTDB_id=564440 KGS74_RS07950 WP_049170439.1 1689069..1690868(+) (pepF) [Lacticaseibacillus casei strain FBL6]
MQHLPVREDVPTKLTWDLTTIYPNDAAWTADFEAVREQAKEAAALKGTLGNSAAALITGIKAVLAVFRRFEKVYVYSSLK
SDQDTGNATYQAMNAKAESLGAGLASQLAFLDPEILAIPADKLAAWRDTESLKPFGHFIDAITVNRQHVLTTAAEALIAS
AGDALNASHATFNVLDNSDLQFGFVENEDGETVQLSNGLYGQLIRSTQRKLRKEAFETLLRAYESMKNTFAQTLSGQVKA
HNFNAKAHHYANARAAAMASNHIPESVYTTLIDQVNTHLPLLHRYVALRKKVLGVDQLHMYDIYTPLTGKPPLTFTLDQA
KAEALKALAPLGDDYLSHVREIFDNRYIDVVENKGKRSGAYSGGSYDTNPFILLNWHDAVDELYTLIHETGHSVHSWYTR
HNQPYVYGDYPIFVAEIASTTNENLLTDYFLTHTDDPKVRAYILNYYLDGFKGTVFRQTQFAEFEHWIHQQDQQGEPLTA
TSMATYYADLNARYYGPDVARDPEIAFEWARIPHFYYNYYVYQYATGFAAASTLAAGISSGEPNAASRYLDYLKSGSSQY
AIDTMKTAGVDMTKPDYLEAAFSMFEKRLTELEELLQKG

Nucleotide


Download         Length: 1800 bp        

>NTDB_id=564440 KGS74_RS07950 WP_049170439.1 1689069..1690868(+) (pepF) [Lacticaseibacillus casei strain FBL6]
ATGCAACATTTACCGGTACGTGAAGATGTCCCAACCAAGCTGACATGGGATCTAACCACCATTTATCCAAATGATGCGGC
GTGGACAGCCGACTTTGAAGCTGTCCGCGAACAGGCCAAAGAGGCGGCTGCGCTCAAGGGAACGTTAGGCAATTCAGCCG
CTGCGCTCATCACCGGCATCAAGGCGGTTTTAGCAGTCTTTCGACGATTTGAGAAAGTCTATGTTTATTCAAGCCTGAAA
AGCGATCAGGATACTGGCAACGCCACTTATCAGGCGATGAATGCCAAGGCTGAAAGTCTCGGCGCCGGGCTGGCCAGTCA
GTTAGCCTTTTTGGATCCGGAAATTCTGGCAATTCCGGCCGACAAGCTGGCAGCATGGCGCGACACTGAAAGTCTTAAGC
CGTTTGGGCATTTTATTGATGCGATCACCGTCAATCGCCAACATGTGCTGACAACCGCAGCGGAAGCTCTGATTGCCAGT
GCCGGTGATGCGCTGAACGCCAGTCATGCCACTTTCAACGTCCTAGACAACTCCGACCTGCAATTCGGTTTTGTCGAAAA
TGAAGACGGCGAAACGGTCCAGCTCAGTAACGGCTTGTATGGCCAGCTGATTCGCTCAACTCAGCGAAAATTGCGCAAAG
AAGCCTTTGAAACGTTACTGCGTGCTTACGAAAGCATGAAGAACACGTTTGCTCAAACGCTGAGCGGCCAGGTCAAGGCG
CACAATTTCAATGCCAAAGCCCATCATTACGCCAATGCCCGCGCGGCGGCAATGGCAAGCAACCACATTCCGGAAAGTGT
TTATACGACCCTCATCGACCAGGTCAACACCCATCTGCCACTTTTGCATCGTTATGTCGCATTGCGGAAAAAAGTCTTGG
GCGTCGATCAACTGCACATGTATGACATTTACACCCCGTTGACGGGCAAGCCGCCATTGACGTTCACGCTTGACCAGGCC
AAAGCCGAAGCATTAAAGGCCTTGGCGCCACTTGGCGATGATTATCTCAGCCATGTCCGGGAAATTTTCGATAACCGCTA
CATTGATGTCGTCGAAAATAAAGGCAAACGCTCCGGCGCCTATTCAGGCGGGTCTTACGATACGAATCCGTTTATTTTGC
TGAACTGGCATGACGCGGTGGATGAGCTTTATACTTTGATTCACGAAACCGGCCACAGCGTTCACAGCTGGTACACGCGT
CACAATCAGCCTTATGTGTATGGGGACTATCCGATTTTTGTTGCCGAAATTGCTTCAACCACTAACGAAAATCTGCTTAC
CGATTACTTCCTGACCCATACGGATGATCCCAAAGTACGTGCCTACATCCTGAATTACTATCTCGATGGGTTCAAAGGCA
CCGTTTTCCGCCAGACGCAATTTGCCGAATTTGAACACTGGATTCATCAACAGGACCAACAAGGCGAGCCACTCACGGCA
ACCAGCATGGCGACTTACTACGCCGATCTCAATGCCCGGTATTATGGACCGGATGTTGCCCGCGATCCCGAAATTGCCTT
CGAATGGGCACGAATCCCGCATTTCTATTACAATTATTATGTCTATCAGTATGCAACCGGATTTGCCGCAGCATCAACGC
TAGCCGCGGGCATTAGTAGCGGTGAACCCAACGCCGCGTCCCGCTACTTGGACTATTTAAAGTCAGGTAGCTCGCAATAC
GCCATCGATACCATGAAAACCGCTGGCGTCGATATGACCAAACCGGACTATCTGGAAGCGGCATTTTCGATGTTTGAAAA
GCGTTTAACGGAATTGGAAGAACTTTTACAGAAAGGATGA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(114-182)

Peptidase family M3 (Peptidase_M3)

(203-582)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

52.862

99.165

0.524