Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaR   Type   Regulator
Locus tag   MA852_RS06365 Genome accession   NZ_CP092025
Coordinates   1212582..1213247 (-) Length   221 a.a.
NCBI ID   WP_057044619.1    Uniprot ID   -
Organism   Campylobacter coli strain 14158-6     
Function   repress competence development; post-transcriptional repression of CSP production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1207582..1218247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MA852_RS06350 (MA852_06350) groES 1209374..1209634 (+) 261 WP_002825273.1 co-chaperone GroES -
  MA852_RS06355 (MA852_06355) groL 1209655..1211292 (+) 1638 WP_002859291.1 chaperonin GroEL -
  MA852_RS06360 (MA852_06360) - 1211384..1212589 (-) 1206 WP_057044618.1 HAMP domain-containing sensor histidine kinase -
  MA852_RS06365 (MA852_06365) ciaR 1212582..1213247 (-) 666 WP_057044619.1 response regulator transcription factor Regulator
  MA852_RS06370 (MA852_06370) - 1213382..1213980 (+) 599 Protein_1239 bacteriohemerythrin -
  MA852_RS06375 (MA852_06375) - 1214027..1214239 (+) 213 WP_044600912.1 ribbon-helix-helix domain-containing protein -
  MA852_RS06380 (MA852_06380) - 1214310..1216073 (-) 1764 WP_057044620.1 ShlB/FhaC/HecB family hemolysin secretion/activation protein -
  MA852_RS06385 (MA852_06385) - 1216096..1216428 (-) 333 WP_025399111.1 c-type cytochrome -
  MA852_RS06390 (MA852_06390) - 1216473..1218158 (-) 1686 WP_228761801.1 hypothetical protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25569.41 Da        Isoelectric Point: 4.8420

>NTDB_id=564337 MA852_RS06365 WP_057044619.1 1212582..1213247(-) (ciaR) [Campylobacter coli strain 14158-6]
MAARILLLEDDLSLSEIIEEFLIDEGYEVYLCTNAKEALGLAYEKHFDLWILDVKVPLGDGFSLLKELRACGKQTPAIFM
TSLNTTEDLKEGYNAGCDDYIRKPFELAELSIRIQALLKRAFSHKNEDYEDLGNGFKFSFTSQILYHFDKALILPSKEIK
LLSLLLKNKNNFLSTERIFEELWEYDEEPSELSLRAYIKNLRKILGKEKIINQRGRGYCYG

Nucleotide


Download         Length: 666 bp        

>NTDB_id=564337 MA852_RS06365 WP_057044619.1 1212582..1213247(-) (ciaR) [Campylobacter coli strain 14158-6]
GTGGCAGCTAGAATTCTGCTTTTAGAAGATGATTTAAGTTTAAGTGAGATTATAGAAGAATTTTTAATCGATGAGGGTTA
TGAAGTTTATTTATGCACCAATGCTAAAGAAGCTTTAGGACTTGCTTATGAAAAACATTTTGATTTGTGGATACTAGATG
TTAAGGTTCCTTTGGGTGATGGATTTTCTTTATTAAAAGAATTAAGAGCTTGTGGAAAACAAACTCCAGCTATTTTTATG
ACTTCTTTAAATACGACAGAAGATTTGAAAGAGGGTTATAATGCAGGTTGTGATGATTATATACGCAAGCCTTTTGAGCT
TGCAGAACTTTCAATTCGTATTCAAGCTTTGTTAAAGAGAGCTTTTTCTCATAAAAATGAAGATTATGAAGATTTGGGGA
ATGGGTTTAAATTCAGCTTTACCTCACAAATTCTTTATCATTTTGATAAGGCTTTAATTCTACCCAGTAAAGAGATCAAG
CTATTATCTTTGCTTTTAAAAAATAAAAATAATTTTTTAAGTACAGAAAGAATCTTTGAAGAGCTTTGGGAGTATGATGA
AGAACCTAGCGAGCTTAGTTTAAGAGCATATATTAAAAATTTACGCAAAATATTAGGAAAAGAAAAAATTATCAATCAAA
GGGGTAGAGGATATTGCTATGGCTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-219)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaR Streptococcus pneumoniae Rx1

36.364

99.548

0.362
  ciaR Streptococcus pneumoniae D39

36.364

99.548

0.362
  ciaR Streptococcus pneumoniae R6

36.364

99.548

0.362
  ciaR Streptococcus pneumoniae TIGR4

36.364

99.548

0.362