Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   KCU57_RS05030 Genome accession   NZ_CP074365
Coordinates   1167925..1169313 (-) Length   462 a.a.
NCBI ID   WP_053833737.1    Uniprot ID   A0A0K2ZBK1
Organism   Xanthomonas translucens strain CFBP 8304     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1162925..1174313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCU57_RS05005 (KCU57_04970) - 1164228..1164677 (+) 450 WP_053838007.1 pilin -
  KCU57_RS05010 (KCU57_04975) - 1164911..1165177 (-) 267 WP_237650391.1 hypothetical protein -
  KCU57_RS05015 (KCU57_04980) pilB 1165404..1167140 (+) 1737 WP_237650392.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KCU57_RS05020 (KCU57_04985) - 1167168..1167461 (-) 294 WP_009580422.1 addiction module antidote protein -
  KCU57_RS05025 (KCU57_04990) - 1167464..1167760 (-) 297 WP_053833736.1 type II toxin-antitoxin system RelE/ParE family toxin -
  KCU57_RS05030 (KCU57_04995) pilR 1167925..1169313 (-) 1389 WP_053833737.1 sigma-54 dependent transcriptional regulator Regulator
  KCU57_RS05035 (KCU57_05000) - 1169388..1171001 (-) 1614 WP_003477089.1 ATP-binding protein -
  KCU57_RS05040 (KCU57_05005) sucC 1171245..1172408 (+) 1164 WP_237650393.1 ADP-forming succinate--CoA ligase subunit beta -
  KCU57_RS05045 (KCU57_05010) sucD 1172432..1173304 (+) 873 WP_009580520.1 succinate--CoA ligase subunit alpha -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 49769.18 Da        Isoelectric Point: 6.5828

>NTDB_id=564298 KCU57_RS05030 WP_053833737.1 1167925..1169313(-) (pilR) [Xanthomonas translucens strain CFBP 8304]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIARHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDLHVLRGLVKHALELNNSERAAPPAPPPEQASRLLGASAAMDVLRATIAKVAR
SQAPVYILGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADQAGLFQAAHGGTLFLD
EVAELPLAMQVKLLRAIQEKSVRPVGASIEVPTDVRILSATHKDLADLVADGRFRHDLYYRINVIELRVPPLRDRGGDLP
QLAAAILARLAKSHGRATPLLSPSALDALNRYAFPGNVRELENILERALAMAEDDQISAADLHLPQPGNSARAAAEAAPA
LPPGVVDIDPTSSALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=564298 KCU57_RS05030 WP_053833737.1 1167925..1169313(-) (pilR) [Xanthomonas translucens strain CFBP 8304]
ATGAACGAAACCCGAAGCGCCCTGGTCGTCGACGACGAACGCGACATCCGCGAACTGCTGGTGCTGACCCTGGGCAGGAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTCGCCGAAGCCCGCGAACTGCTGGCGAGCAATCCCTACGACCTGTGCATCA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAACTGGTCAGCGAGATCGCCCGCCACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGATCTGGCGGTGGAAGCGCTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACCTGCACGTGCTGCGCGGCCTGGTCAAGCACGCACTGGAACTCAACAACAGCGAACGCGCCGCGCCGCCGGCGCCGC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGCCTCGGCGGCGATGGACGTGCTGCGCGCCACCATCGCCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCCTCGGCGAGTCCGGCGTCGGCAAGGAACTGGTCGCGCGCACCATCCACGAGCAGGGCGC
GCGCGCGGCCGGGCCGTTCGTGCCGGTCAACTGCGGCGCGATCCCGGCCGAACTGATGGAAAGCGAATTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCGCATGCCGACCAGGCCGGCCTGTTCCAGGCCGCGCACGGCGGCACCCTGTTCCTGGAC
GAAGTGGCCGAGCTGCCGCTGGCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGAAATCGGTGCGCCCGGTCGGCGC
CTCGATCGAAGTGCCCACCGACGTGCGCATCCTCTCGGCCACGCACAAGGACCTGGCCGACCTGGTCGCCGACGGCCGCT
TCCGCCACGACCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGACCGCGGCGGCGACCTGCCG
CAACTGGCCGCGGCGATCCTGGCACGGCTGGCCAAGAGCCATGGCCGTGCCACCCCGCTGCTGTCGCCGTCGGCGCTGGA
CGCGCTGAACCGCTACGCCTTCCCCGGCAACGTGCGCGAACTGGAGAACATCCTCGAGCGCGCCCTGGCAATGGCCGAAG
ACGACCAGATCAGCGCCGCCGACCTGCACCTGCCGCAGCCCGGCAACAGCGCCCGCGCCGCGGCCGAAGCCGCGCCCGCG
CTGCCGCCCGGCGTGGTCGACATCGACCCGACCTCCTCGGCCCTGCCCTCCTACATCGAACAGCTCGAGCGCGCCGCGAT
CCAGAAGGCGCTGGAAGAGAACCGCTGGAACAAGACCCGCACCGCCGCCCAGCTCGGCATCACCTTCCGTGCGCTGCGCT
ACAAGCTCAAGAAGTTGGGAATGGAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-114)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Bacterial regulatory protein, Fis family (HTH_8)

(419-459)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0K2ZBK1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.527

99.351

0.621
  pilR Acinetobacter baumannii strain A118

46.868

100

0.47