Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   KHA79_RS04575 Genome accession   NZ_CP074364
Coordinates   1066495..1067877 (-) Length   460 a.a.
NCBI ID   WP_039005783.1    Uniprot ID   -
Organism   Xanthomonas translucens pv. cerealis strain CFBP 2541     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1065675..1074697 1066495..1067877 within 0


Gene organization within MGE regions


Location: 1065675..1074697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHA79_RS04565 (KHA79_04545) - 1065675..1066127 (-) 453 WP_230812364.1 Fic/DOC family protein -
  KHA79_RS04570 (KHA79_04550) - 1066124..1066306 (-) 183 WP_003477093.1 YhfG family protein -
  KHA79_RS04575 (KHA79_04555) pilR 1066495..1067877 (-) 1383 WP_039005783.1 sigma-54-dependent transcriptional regulator Regulator
  KHA79_RS04580 (KHA79_04560) - 1067951..1069564 (-) 1614 WP_039008924.1 sensor histidine kinase -
  KHA79_RS04585 (KHA79_04565) sucC 1069806..1070969 (+) 1164 WP_003466374.1 ADP-forming succinate--CoA ligase subunit beta -
  KHA79_RS04590 (KHA79_04570) sucD 1070993..1071865 (+) 873 WP_009580520.1 succinate--CoA ligase subunit alpha -
  KHA79_RS04595 (KHA79_04575) - 1072555..1072872 (+) 318 WP_162483286.1 hypothetical protein -
  KHA79_RS04600 (KHA79_04580) - 1072841..1074697 (-) 1857 WP_141696241.1 hypothetical protein -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49607.00 Da        Isoelectric Point: 6.7835

>NTDB_id=564282 KHA79_RS04575 WP_039005783.1 1066495..1067877(-) (pilR) [Xanthomonas translucens pv. cerealis strain CFBP 2541]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIARHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDLHVLRGLVRHALELNNSERAAPPPPAQASRLLGTSAAMDVLRATIAKVARSQ
APVYILGESGVGKELVAHTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFSGAHADQAGLFQAAHGGTLFLDEV
AELPLPMQVKLLRAIQEKSVRPVGASTEVPTDVRILSATHKDLADLVADGRFRHDLYYRINVIELRVPPLRDRGGDLPQL
AAAILARLAKSHGRATPLLSPSALDALNRYAFPGNVRELENILERALAMAEDAQISAADLHLPQPGNNARAAAEAAPVLP
PGVIDIDPTSSALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=564282 KHA79_RS04575 WP_039005783.1 1066495..1067877(-) (pilR) [Xanthomonas translucens pv. cerealis strain CFBP 2541]
ATGAACGAAACCCGAAGCGCCCTGGTCGTCGACGACGAACGCGACATCCGCGAACTGCTGGTGCTGACCCTGGGCAGGAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTCGCCGAAGCCCGCGAACTGCTGGCGAGCAATCCCTATGACCTGTGCATCA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAACTGGTCAGCGAGATCGCCCGCCACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCAGTGGAAGCGCTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACCTCCACGTGCTGCGCGGCCTGGTCAGGCACGCGCTGGAACTCAACAACAGCGAACGCGCAGCGCCGCCGCCGCCAG
CGCAGGCCAGCCGCCTGCTCGGCACCTCGGCCGCAATGGACGTGCTGCGCGCTACCATCGCCAAGGTCGCGCGCAGCCAG
GCGCCGGTCTACATCCTCGGCGAGTCCGGGGTCGGCAAGGAGCTGGTCGCGCACACCATCCACGAGCAGGGCGCGCGCGC
GGCCGGGCCGTTCGTGCCGGTCAACTGCGGCGCGATCCCGGCCGAACTGATGGAAAGCGAATTCTTCGGCCACAAGAAGG
GCAGCTTCAGCGGCGCGCATGCCGACCAGGCCGGCCTGTTCCAGGCCGCGCACGGCGGCACCCTGTTCCTGGACGAAGTG
GCCGAGCTGCCGCTGCCGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAGAAATCGGTGCGCCCGGTCGGCGCATCGAC
CGAAGTGCCGACCGACGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGCCGACCTGGTCGCCGACGGCCGCTTCCGCC
ACGACCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGACCGCGGCGGCGACCTGCCGCAACTG
GCCGCAGCGATCCTGGCACGGCTGGCCAAGAGCCATGGCAGAGCCACCCCGCTGCTGTCGCCGTCGGCGCTGGACGCGCT
GAACCGCTACGCCTTCCCCGGCAACGTGCGCGAACTGGAGAACATCCTCGAGCGCGCCCTGGCGATGGCCGAAGACGCCC
AGATCAGCGCCGCCGACCTGCACCTGCCGCAGCCCGGCAACAACGCCCGTGCCGCGGCCGAAGCCGCGCCCGTACTGCCG
CCCGGCGTGATCGACATCGACCCGACCTCCTCGGCCCTGCCCTCCTACATCGAGCAGCTTGAGCGCGCCGCGATCCAGAA
GGCGCTGGAAGAAAACCGCTGGAACAAGACCCGCACCGCCGCCCAGCTCGGCATCACCTTCCGTGCGCTGCGCTACAAAC
TGAAGAAGCTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(417-457)

Response regulator receiver domain (Response_reg)

(8-114)

Sigma-54 interaction domain (Sigma54_activat)

(140-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

61.269

99.348

0.609
  pilR Acinetobacter baumannii strain A118

47.505

100

0.476