Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   MA544_RS06720 Genome accession   NZ_CP092017
Coordinates   1285564..1286430 (-) Length   288 a.a.
NCBI ID   WP_002852840.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain 15065A     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1280564..1291430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MA544_RS06700 (MA544_06700) metF 1282417..1283265 (+) 849 WP_002858469.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  MA544_RS06705 (MA544_06705) - 1283287..1283478 (-) 192 WP_002852856.1 membrane protein -
  MA544_RS06710 (MA544_06710) atpB 1283475..1284155 (-) 681 WP_052786513.1 F0F1 ATP synthase subunit A -
  MA544_RS06715 (MA544_06715) radA 1284224..1285564 (-) 1341 WP_052786514.1 DNA repair protein RadA Machinery gene
  MA544_RS06720 (MA544_06720) pilA 1285564..1286430 (-) 867 WP_002852840.1 signal recognition particle-docking protein FtsY Machinery gene
  MA544_RS06725 (MA544_06725) - 1286430..1286987 (-) 558 WP_002869638.1 TlpA disulfide reductase family protein -
  MA544_RS06730 (MA544_06730) - 1287070..1287696 (+) 627 WP_002860439.1 5-formyltetrahydrofolate cyclo-ligase -
  MA544_RS06735 (MA544_06735) rny 1287617..1289170 (+) 1554 WP_057035853.1 ribonuclease Y -
  MA544_RS06740 (MA544_06740) - 1289179..1289736 (+) 558 WP_002852823.1 DedA family protein -
  MA544_RS06745 (MA544_06745) - 1289736..1290995 (+) 1260 WP_002867371.1 ComEC/Rec2 family competence protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 32036.03 Da        Isoelectric Point: 5.5179

>NTDB_id=564156 MA544_RS06720 WP_002852840.1 1285564..1286430(-) (pilA) [Campylobacter jejuni subsp. jejuni strain 15065A]
MFNFFKKGLAKTLENIVGIKGENKKITKDLLEEILLEADVSYEIVEEIIYYLPPQNEVKKEDLKRVMGSYFLYEKKETNQ
EKPFVELILGVNGAGKTTSIAKLAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVDIVLTAQGHDPSAVAFDTISK
AKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEGAPHRKILVLDGTQGNAGILQAKAFNELVKLDGVIITKLDG
TAKGGALFSIARELELPIFYVGVGEQMTDLQEFNASAYLDTLLDPIFE

Nucleotide


Download         Length: 867 bp        

>NTDB_id=564156 MA544_RS06720 WP_002852840.1 1285564..1286430(-) (pilA) [Campylobacter jejuni subsp. jejuni strain 15065A]
ATGTTTAATTTTTTTAAAAAAGGACTTGCAAAAACTCTTGAAAATATTGTTGGGATTAAAGGAGAGAATAAAAAGATAAC
CAAAGATTTGCTTGAAGAAATTTTGCTTGAAGCAGATGTAAGTTATGAAATAGTTGAAGAGATAATTTATTATTTACCAC
CTCAAAATGAAGTAAAAAAAGAAGATTTAAAGCGTGTTATGGGTTCTTATTTTCTTTATGAAAAAAAAGAAACCAATCAA
GAAAAACCTTTTGTAGAGCTTATTTTAGGAGTAAATGGAGCAGGAAAAACAACAAGTATTGCCAAACTTGCTTATTTATA
TAAAAACCAAAATCAAAAAGTGATTTTAGGAGCGTGTGATACTTTTAGAGCAGGTGCGATTGAACAATTAAAACTTTGGG
CGCAAAAAGTGGATGTAGATATAGTTTTAACTGCACAAGGGCATGATCCTTCAGCGGTTGCTTTTGATACCATTTCTAAA
GCAAAAGCAAAGGATTTTGATAGAGTTATTATCGATACAGCAGGGCGTTTGCAAAATCAAAAAAATTTAGCCCATGAGCT
TGAAAAAATTGTGAGAATTTCAAACAAAGCTTTAGAAGGTGCACCCCATAGAAAAATTTTAGTTTTAGATGGAACACAGG
GAAATGCTGGAATTTTACAAGCTAAAGCTTTTAATGAGCTTGTAAAACTTGATGGTGTGATTATCACAAAGCTTGATGGG
ACAGCTAAAGGGGGTGCACTTTTTAGTATAGCAAGAGAGCTTGAGCTTCCTATTTTTTATGTAGGCGTGGGTGAGCAAAT
GACGGATTTGCAAGAATTTAATGCAAGTGCTTATTTAGATACTTTATTAGATCCTATTTTTGAATAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(84-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

41.254

100

0.434