Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   MA544_RS06095 Genome accession   NZ_CP092017
Coordinates   1162648..1163199 (+) Length   183 a.a.
NCBI ID   WP_057035967.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain 15065A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1157648..1168199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MA544_RS06060 (MA544_06060) - 1157835..1158261 (+) 427 Protein_1188 GNAT family N-acetyltransferase -
  MA544_RS06065 (MA544_06065) - 1158325..1158946 (+) 622 Protein_1189 NAD(P)H-dependent oxidoreductase -
  MA544_RS06070 (MA544_06070) - 1158946..1159551 (+) 606 WP_052786485.1 NAD(P)H-dependent oxidoreductase -
  MA544_RS06075 (MA544_06075) pgsA 1159676..1160212 (+) 537 WP_052786486.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MA544_RS06080 (MA544_06080) rseP 1160209..1161315 (+) 1107 WP_057035966.1 RIP metalloprotease RseP -
  MA544_RS06085 (MA544_06085) - 1161308..1162175 (+) 868 Protein_1193 VirK family antimicrobial peptide resistance protein -
  MA544_RS06090 (MA544_06090) rpsF 1162262..1162639 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  MA544_RS06095 (MA544_06095) ssb 1162648..1163199 (+) 552 WP_057035967.1 single-stranded DNA-binding protein Machinery gene
  MA544_RS06100 (MA544_06100) rpsR 1163210..1163470 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  MA544_RS06105 (MA544_06105) lon 1163529..1165904 (-) 2376 WP_002878791.1 endopeptidase La -
  MA544_RS06110 (MA544_06110) - 1165921..1166568 (-) 648 WP_002860191.1 outer membrane protein assembly factor BamD -
  MA544_RS06115 (MA544_06115) fliW 1166729..1167118 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  MA544_RS06120 (MA544_06120) proC 1167118..1167849 (+) 732 WP_002859150.1 pyrroline-5-carboxylate reductase Machinery gene
  MA544_RS06125 (MA544_06125) ctsT 1167846..1168148 (+) 303 WP_002875928.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20683.58 Da        Isoelectric Point: 5.0431

>NTDB_id=564147 MA544_RS06095 WP_057035967.1 1162648..1163199(+) (ssb) [Campylobacter jejuni subsp. jejuni strain 15065A]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKASPAPQRNQNP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=564147 MA544_RS06095 WP_057035967.1 1162648..1163199(+) (ssb) [Campylobacter jejuni subsp. jejuni strain 15065A]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAGCCCTGCTCCACAAAGAAACCAAAACCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.503

100

0.393
  ssb Vibrio cholerae strain A1552

37.288

96.721

0.361