Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   KHA74_RS17670 Genome accession   NZ_CP074348
Coordinates   3583250..3583939 (-) Length   229 a.a.
NCBI ID   WP_217898730.1    Uniprot ID   -
Organism   Bacillus velezensis strain SW5     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3578250..3588939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHA74_RS17635 (KHA74_17555) fliW 3578341..3578772 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  KHA74_RS17640 (KHA74_17560) - 3578802..3579371 (-) 570 WP_007407476.1 DUF6470 family protein -
  KHA74_RS17645 (KHA74_17565) flgL 3579462..3580379 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  KHA74_RS17650 (KHA74_17570) flgK 3580391..3581908 (-) 1518 WP_025285351.1 flagellar hook-associated protein FlgK -
  KHA74_RS17655 (KHA74_17575) - 3581924..3582406 (-) 483 WP_003151394.1 flagellar protein FlgN -
  KHA74_RS17660 (KHA74_17580) flgM 3582421..3582687 (-) 267 WP_094032533.1 flagellar biosynthesis anti-sigma factor FlgM -
  KHA74_RS17665 (KHA74_17585) - 3582757..3583176 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  KHA74_RS17670 (KHA74_17590) comFC 3583250..3583939 (-) 690 WP_217898730.1 phosphoribosyltransferase family protein Machinery gene
  KHA74_RS17675 (KHA74_17595) - 3583945..3584229 (-) 285 WP_007407481.1 competence protein ComFB -
  KHA74_RS17680 (KHA74_17600) comFA 3584287..3585672 (-) 1386 WP_094032535.1 DEAD/DEAH box helicase Machinery gene
  KHA74_RS17685 (KHA74_17605) - 3585781..3586629 (-) 849 WP_003151387.1 DegV family protein -
  KHA74_RS17690 (KHA74_17610) degU 3586727..3587416 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  KHA74_RS17695 (KHA74_17615) degS 3587493..3588656 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25271.92 Da        Isoelectric Point: 8.2927

>NTDB_id=564097 KHA74_RS17670 WP_217898730.1 3583250..3583939(-) (comFC) [Bacillus velezensis strain SW5]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRRNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTVGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=564097 KHA74_RS17670 WP_217898730.1 3583250..3583939(-) (comFC) [Bacillus velezensis strain SW5]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCGAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGTGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.912

99.127

0.594