Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   BAM5036_RS01800 Genome accession   NC_020410
Coordinates   341407..341805 (-) Length   132 a.a.
NCBI ID   WP_015416782.1    Uniprot ID   -
Organism   Bacillus velezensis UCMB5036     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 336407..346805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAM5036_RS01775 (BAM5036_0314) - 336578..337780 (+) 1203 WP_015416778.1 GTP-binding protein -
  BAM5036_RS01780 (BAM5036_0315) - 337845..338981 (+) 1137 WP_015416779.1 zinc-dependent alcohol dehydrogenase -
  BAM5036_RS01785 (BAM5036_0316) - 338996..339430 (+) 435 WP_012116767.1 RDD family protein -
  BAM5036_RS01790 (BAM5036_0317) - 339548..339826 (+) 279 WP_263612330.1 YckD family protein -
  BAM5036_RS01795 (BAM5036_0318) - 339930..341366 (+) 1437 WP_015416781.1 glycoside hydrolase family 1 protein -
  BAM5036_RS01800 (BAM5036_0319) nin/comJ 341407..341805 (-) 399 WP_015416782.1 competence protein ComJ Regulator
  BAM5036_RS01805 (BAM5036_0320) nucA/comI 341826..342263 (-) 438 WP_015416783.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  BAM5036_RS01810 (BAM5036_0321) hxlB 342621..343178 (-) 558 WP_015416784.1 6-phospho-3-hexuloisomerase -
  BAM5036_RS01815 (BAM5036_0322) hxlA 343175..343810 (-) 636 WP_015416785.1 3-hexulose-6-phosphate synthase -
  BAM5036_RS01820 (BAM5036_0323) - 344042..344404 (+) 363 WP_014304320.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 15024.00 Da        Isoelectric Point: 4.9712

>NTDB_id=56345 BAM5036_RS01800 WP_015416782.1 341407..341805(-) (nin/comJ) [Bacillus velezensis UCMB5036]
MNKSWKPQELTISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVLRLNTSEPVPSYEKKATVPF
EAVKDGIEIESVMSKRLFFHIPKGRYSLTCYSVPAEISDLHADTYIIDAASM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=56345 BAM5036_RS01800 WP_015416782.1 341407..341805(-) (nin/comJ) [Bacillus velezensis UCMB5036]
TTGAATAAATCATGGAAACCGCAAGAACTGACCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTTGAGGCAAGGAGAA
ATACGAGGGCATTTATCGTCCTCAGGCTTAACACAAGTGAACCGGTACCATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCAAAGCGGCTTTTCTTTCATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTGATGCAGCCTCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

75.758

100

0.758

Multiple sequence alignment