Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   BAM5036_RS01805 Genome accession   NC_020410
Coordinates   341826..342263 (-) Length   145 a.a.
NCBI ID   WP_015416783.1    Uniprot ID   -
Organism   Bacillus velezensis UCMB5036     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 336826..347263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAM5036_RS01780 (BAM5036_0315) - 337845..338981 (+) 1137 WP_015416779.1 zinc-dependent alcohol dehydrogenase -
  BAM5036_RS01785 (BAM5036_0316) - 338996..339430 (+) 435 WP_012116767.1 RDD family protein -
  BAM5036_RS01790 (BAM5036_0317) - 339548..339826 (+) 279 WP_263612330.1 YckD family protein -
  BAM5036_RS01795 (BAM5036_0318) - 339930..341366 (+) 1437 WP_015416781.1 glycoside hydrolase family 1 protein -
  BAM5036_RS01800 (BAM5036_0319) nin/comJ 341407..341805 (-) 399 WP_015416782.1 competence protein ComJ Regulator
  BAM5036_RS01805 (BAM5036_0320) nucA/comI 341826..342263 (-) 438 WP_015416783.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  BAM5036_RS01810 (BAM5036_0321) hxlB 342621..343178 (-) 558 WP_015416784.1 6-phospho-3-hexuloisomerase -
  BAM5036_RS01815 (BAM5036_0322) hxlA 343175..343810 (-) 636 WP_015416785.1 3-hexulose-6-phosphate synthase -
  BAM5036_RS01820 (BAM5036_0323) - 344042..344404 (+) 363 WP_014304320.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16038.34 Da        Isoelectric Point: 8.4850

>NTDB_id=56346 BAM5036_RS01805 WP_015416783.1 341826..342263(-) (nucA/comI) [Bacillus velezensis UCMB5036]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLLKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=56346 BAM5036_RS01805 WP_015416783.1 341826..342263(-) (nucA/comI) [Bacillus velezensis UCMB5036]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCTTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCCGTCAAAACGGGATACGATAGAGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCATGGGTCGGACATCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTGAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.016

86.897

0.634

Multiple sequence alignment