Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   L6503_RS02360 Genome accession   NZ_CP091770
Coordinates   510532..511083 (-) Length   183 a.a.
NCBI ID   WP_212791330.1    Uniprot ID   -
Organism   Helicobacter pylori strain K115     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 505532..516083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6503_RS02340 (L6503_02340) - 505573..506709 (+) 1137 WP_237775951.1 potassium channel family protein -
  L6503_RS02345 (L6503_02345) - 506725..507105 (-) 381 WP_237775952.1 hypothetical protein -
  L6503_RS02350 (L6503_02350) - 507227..507481 (-) 255 WP_237775953.1 hypothetical protein -
  L6503_RS02355 (L6503_02355) - 507785..510486 (-) 2702 Protein_465 DUF3519 domain-containing protein -
  L6503_RS02360 (L6503_02360) ruvA 510532..511083 (-) 552 WP_212791330.1 Holliday junction branch migration protein RuvA Machinery gene
  L6503_RS02365 (L6503_02365) - 511109..512953 (-) 1845 WP_237775954.1 FapA family protein -
  L6503_RS02370 (L6503_02370) murJ 513046..514506 (+) 1461 WP_237775955.1 murein biosynthesis integral membrane protein MurJ -
  L6503_RS02375 (L6503_02375) cysS 514507..515904 (+) 1398 WP_237775956.1 cysteine--tRNA ligase -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20185.75 Da        Isoelectric Point: 9.4305

>NTDB_id=563431 L6503_RS02360 WP_212791330.1 510532..511083(-) (ruvA) [Helicobacter pylori strain K115]
MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTSALLQAGQKARLKILQVIKEDANLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDETSPTRNEVFLALESLGFKSAEINKV
LKTLKPHLSTETAIKEALQQLRS

Nucleotide


Download         Length: 552 bp        

>NTDB_id=563431 L6503_RS02360 WP_212791330.1 510532..511083(-) (ruvA) [Helicobacter pylori strain K115]
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATCTCTGCTTTAGAAGCGCATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACTTCTGCTTTGCTCCAAGCGGGCCAAAAAGCGCGTTTGAAAATCTTACAAGTGATTAAAG
AAGATGCAAATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAACATTATCGCCACTAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGCATAGGCAAAAAGCTCGCTGATAAGATCATGGTGGATTTGATTGGTTTTTTCATTCAAG
ATGAAACTAGCCCTACGCGCAACGAAGTCTTTTTAGCCCTAGAGAGTTTGGGCTTTAAAAGCGCTGAAATCAATAAAGTT
TTAAAAACCCTAAAACCCCATCTCAGCACCGAAACAGCGATTAAAGAAGCCTTACAGCAACTGCGCTCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(140-181)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Helicobacter pylori 26695

92.896

100

0.929
  ruvA Bacillus subtilis subsp. subtilis str. 168

33.333

100

0.366