Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BAM5036_RS00225 Genome accession   NC_020410
Coordinates   45661..45951 (-) Length   96 a.a.
NCBI ID   WP_170936346.1    Uniprot ID   -
Organism   Bacillus velezensis UCMB5036     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 40661..50951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAM5036_RS00185 (BAM5036_0032) darA 40678..41007 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  BAM5036_RS00190 (BAM5036_0033) - 41020..41460 (+) 441 WP_004264730.1 YaaR family protein -
  BAM5036_RS00195 (BAM5036_0034) holB 41472..42461 (+) 990 WP_015416650.1 DNA polymerase III subunit delta' -
  BAM5036_RS00200 (BAM5036_0035) ricT 42464..43291 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  BAM5036_RS00205 (BAM5036_0036) yabA 43306..43665 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  BAM5036_RS00210 (BAM5036_0037) - 43726..44469 (+) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  BAM5036_RS00215 (BAM5036_0038) - 44456..44755 (+) 300 WP_015416651.1 GIY-YIG nuclease family protein -
  BAM5036_RS00220 (BAM5036_0039) rsmI 44730..45611 (+) 882 WP_031379323.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  BAM5036_RS00225 (BAM5036_0040) abrB 45661..45951 (-) 291 WP_170936346.1 transition state genes transcriptional regulator AbrB Regulator
  BAM5036_RS00230 (BAM5036_0041) metG 46434..48425 (+) 1992 WP_015416654.1 methionine--tRNA ligase -
  BAM5036_RS00235 (BAM5036_0042) - 48502..49269 (+) 768 WP_015416655.1 TatD family hydrolase -
  BAM5036_RS00240 (BAM5036_0043) - 49404..50729 (+) 1326 WP_134816645.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.62 Da        Isoelectric Point: 7.9639

>NTDB_id=56341 BAM5036_RS00225 WP_170936346.1 45661..45951(-) (abrB) [Bacillus velezensis UCMB5036]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIKNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=56341 BAM5036_RS00225 WP_170936346.1 45661..45951(-) (abrB) [Bacillus velezensis UCMB5036]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATACTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTAAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

96.875

100

0.969

Multiple sequence alignment