Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   L6507_RS06155 Genome accession   NZ_CP091756
Coordinates   1273396..1274133 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain LC-1302-2020     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1268396..1279133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6507_RS06130 (L6507_06130) tyrA 1268772..1269893 (+) 1122 WP_000225229.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  L6507_RS06135 (L6507_06135) pheA 1269936..1271096 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  L6507_RS06140 (L6507_06140) pheL 1271195..1271242 (-) 48 WP_010723158.1 phe operon leader peptide -
  L6507_RS06145 (L6507_06145) raiA 1271346..1271687 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  L6507_RS06150 (L6507_06150) - 1271946..1273292 (-) 1347 WP_000483767.1 IS4-like element IS4 family transposase -
  L6507_RS06155 (L6507_06155) comL 1273396..1274133 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  L6507_RS06160 (L6507_06160) rluD 1274268..1275248 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  L6507_RS06165 (L6507_06165) yfiH 1275245..1275976 (+) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  L6507_RS06170 (L6507_06170) clpC 1276106..1278679 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=563361 L6507_RS06155 WP_000197686.1 1273396..1274133(-) (comL) [Escherichia coli strain LC-1302-2020]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=563361 L6507_RS06155 WP_000197686.1 1273396..1274133(-) (comL) [Escherichia coli strain LC-1302-2020]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376