Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   L6L57_RS16540 Genome accession   NZ_CP091712
Coordinates   3481054..3481791 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain KFu014     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3476054..3486791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6L57_RS16525 (L6L57_16525) clpC 3476508..3479081 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  L6L57_RS16530 (L6L57_16530) yfiH 3479211..3479942 (-) 732 WP_000040130.1 purine nucleoside phosphorylase YfiH -
  L6L57_RS16535 (L6L57_16535) rluD 3479939..3480919 (-) 981 WP_000079097.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  L6L57_RS16540 (L6L57_16540) comL 3481054..3481791 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  L6L57_RS16545 (L6L57_16545) raiA 3482062..3482403 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  L6L57_RS16550 (L6L57_16550) pheL 3482507..3482554 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  L6L57_RS16555 (L6L57_16555) pheA 3482653..3483813 (+) 1161 WP_000200124.1 bifunctional chorismate mutase/prephenate dehydratase -
  L6L57_RS16560 (L6L57_16560) tyrA 3483856..3484977 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  L6L57_RS16565 (L6L57_16565) aroF 3484988..3486058 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  L6L57_RS16570 (L6L57_16570) yfiL 3486268..3486633 (+) 366 WP_001353010.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=563295 L6L57_RS16540 WP_000197686.1 3481054..3481791(+) (comL) [Escherichia coli strain KFu014]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=563295 L6L57_RS16540 WP_000197686.1 3481054..3481791(+) (comL) [Escherichia coli strain KFu014]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCTGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376