Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   KFQ09_RS17505 Genome accession   NZ_CP074101
Coordinates   3405821..3406156 (-) Length   111 a.a.
NCBI ID   WP_017357978.1    Uniprot ID   -
Organism   Bacillus sp. FS02     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 3400821..3411156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFQ09_RS17455 comGC 3401032..3401325 (+) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene
  KFQ09_RS17460 comGD 3401318..3401764 (+) 447 WP_017367594.1 competence type IV pilus minor pilin ComGD -
  KFQ09_RS17465 comGE 3401748..3402062 (+) 315 WP_017367593.1 competence type IV pilus minor pilin ComGE -
  KFQ09_RS17470 comGF 3402004..3402501 (+) 498 WP_017367592.1 competence type IV pilus minor pilin ComGF -
  KFQ09_RS17475 comGG 3402498..3402881 (+) 384 WP_017357982.1 competence type IV pilus minor pilin ComGG -
  KFQ09_RS17480 - 3402942..3403130 (+) 189 WP_017367591.1 YqzE family protein -
  KFQ09_RS17485 - 3403166..3403492 (-) 327 WP_017367590.1 DUF3889 domain-containing protein -
  KFQ09_RS17490 tapA 3403745..3404272 (+) 528 WP_017367589.1 amyloid fiber anchoring/assembly protein TapA -
  KFQ09_RS17495 sipW 3404323..3404895 (+) 573 WP_017357979.1 signal peptidase I SipW -
  KFQ09_RS17500 tasA 3404954..3405753 (+) 800 Protein_3392 biofilm matrix protein TasA -
  KFQ09_RS17505 sinR 3405821..3406156 (-) 336 WP_017357978.1 transcriptional regulator SinR Regulator
  KFQ09_RS17510 - 3406190..3406354 (-) 165 WP_008342197.1 anti-repressor SinI family protein -
  KFQ09_RS17515 - 3406539..3407336 (-) 798 WP_017367588.1 YqhG family protein -
  KFQ09_RS17520 - 3407351..3409021 (-) 1671 WP_017367587.1 DEAD/DEAH box helicase -
  KFQ09_RS17525 gcvT 3409583..3410680 (+) 1098 WP_255835848.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12936.47 Da        Isoelectric Point: 4.8062

>NTDB_id=563293 KFQ09_RS17505 WP_017357978.1 3405821..3406156(-) (sinR) [Bacillus sp. FS02]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=563293 KFQ09_RS17505 WP_017357978.1 3405821..3406156(-) (sinR) [Bacillus sp. FS02]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

92.793

100

0.928