Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   L6L57_RS09200 Genome accession   NZ_CP091712
Coordinates   1924557..1925213 (+) Length   218 a.a.
NCBI ID   WP_000611335.1    Uniprot ID   Q3Z2T8
Organism   Escherichia coli strain KFu014     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1919557..1930213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6L57_RS09170 (L6L57_09170) dcyD 1920437..1921423 (+) 987 WP_001128215.1 D-cysteine desulfhydrase -
  L6L57_RS09175 (L6L57_09175) tcyL 1921438..1922106 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  L6L57_RS09180 (L6L57_09180) tcyN 1922103..1922855 (+) 753 WP_001273007.1 L-cystine ABC transporter ATP-binding protein TcyN -
  L6L57_RS09185 (L6L57_09185) sdiA 1923085..1923807 (+) 723 WP_001154279.1 transcriptional regulator SdiA -
  L6L57_RS09190 (L6L57_09190) yecF 1923874..1924098 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  L6L57_RS09195 (L6L57_09195) yecU 1924085..1924261 (-) 177 WP_000590347.1 protein YecU -
  L6L57_RS24215 - 1924344..1924415 (-) 72 Protein_1799 transcriptional regulator -
  L6L57_RS09200 (L6L57_09200) letA 1924557..1925213 (+) 657 WP_000611335.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  L6L57_RS09205 (L6L57_09205) uvrC 1925210..1927042 (+) 1833 WP_001283415.1 excinuclease ABC subunit UvrC Machinery gene
  L6L57_RS09210 (L6L57_09210) pgsA 1927099..1927647 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  L6L57_RS09230 (L6L57_09230) yecA 1928297..1928962 (+) 666 WP_000847902.1 UPF0149 family protein YecA -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23892.65 Da        Isoelectric Point: 6.9614

>NTDB_id=563276 L6L57_RS09200 WP_000611335.1 1924557..1925213(+) (letA) [Escherichia coli strain KFu014]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=563276 L6L57_RS09200 WP_000611335.1 1924557..1925213(+) (letA) [Escherichia coli strain KFu014]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3Z2T8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486