Detailed information    

insolico Bioinformatically predicted

Overview

Name   hapR   Type   Regulator
Locus tag   KFZ68_RS02050 Genome accession   NZ_CP074084
Coordinates   421030..421626 (-) Length   198 a.a.
NCBI ID   WP_065171760.1    Uniprot ID   -
Organism   Photobacterium damselae strain Pdd1411     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 416030..426626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFZ68_RS02035 (KFZ68_02035) - 417122..418135 (+) 1014 WP_065171762.1 Fe(3+) ABC transporter substrate-binding protein -
  KFZ68_RS02040 (KFZ68_02040) - 418292..419917 (+) 1626 WP_284647943.1 iron ABC transporter permease -
  KFZ68_RS02045 (KFZ68_02045) - 419920..420957 (+) 1038 WP_284648288.1 ABC transporter ATP-binding protein -
  KFZ68_RS02050 (KFZ68_02050) hapR 421030..421626 (-) 597 WP_065171760.1 TetR/AcrR family transcriptional regulator Regulator
  KFZ68_RS02055 (KFZ68_02055) hpt 421847..422383 (+) 537 WP_005297644.1 hypoxanthine phosphoribosyltransferase -
  KFZ68_RS02060 (KFZ68_02060) can 422458..423129 (-) 672 WP_005297646.1 carbonate dehydratase -
  KFZ68_RS02065 (KFZ68_02065) - 423228..424151 (+) 924 WP_237029696.1 ABC transporter ATP-binding protein -
  KFZ68_RS02070 (KFZ68_02070) - 424148..424918 (+) 771 WP_065171758.1 ABC transporter permease -
  KFZ68_RS02075 (KFZ68_02075) - 424966..425448 (-) 483 Protein_380 IS3 family transposase -
  KFZ68_RS02080 (KFZ68_02085) - 425687..426196 (-) 510 WP_284647944.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22748.02 Da        Isoelectric Point: 7.1177

>NTDB_id=563091 KFZ68_RS02050 WP_065171760.1 421030..421626(-) (hapR) [Photobacterium damselae strain Pdd1411]
MDMVIKRTRTRLSPEKRREQLLNSALDVFARRGIGRGGHADIAEIANVSVATVFNYFPTREDLVEQVLIHVESRFNKLLT
HSLNDEMPTAKAKLTNLTDCLIKAVIEQHDWLKVWFEWSTSVRDDIWPLFIKTNKGNLQKLTAVFEQGLTAGEFSRSQSA
SDLAHMFHGTCYVLYLQTHLTLDPEIMQRQADNYLQSL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=563091 KFZ68_RS02050 WP_065171760.1 421030..421626(-) (hapR) [Photobacterium damselae strain Pdd1411]
ATGGACATGGTGATTAAGCGTACTCGTACTCGCTTATCTCCAGAAAAACGTCGAGAGCAGCTACTCAATAGTGCACTGGA
TGTTTTTGCTCGTCGTGGTATTGGCCGAGGAGGTCACGCAGATATCGCGGAAATAGCAAATGTCTCTGTTGCGACCGTTT
TCAATTATTTTCCAACTCGCGAAGATTTAGTAGAACAGGTATTAATTCACGTTGAATCTCGTTTCAATAAACTACTGACA
CACTCTCTCAACGATGAAATGCCAACCGCAAAAGCAAAACTGACTAACCTTACCGATTGCTTAATTAAGGCTGTAATAGA
GCAGCACGATTGGCTAAAAGTCTGGTTTGAATGGAGTACATCAGTACGTGATGATATTTGGCCGCTATTTATCAAAACCA
ATAAAGGTAACTTACAAAAGTTAACCGCGGTTTTTGAACAGGGATTAACAGCTGGAGAATTTAGTCGCTCTCAATCTGCA
TCAGATTTAGCGCATATGTTTCACGGTACCTGTTATGTGCTGTACTTACAAACTCACCTAACCTTAGACCCTGAAATCAT
GCAGCGACAAGCTGATAACTATTTACAGAGCCTATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(21-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hapR Vibrio cholerae C6706

48.241

100

0.485
  hapR Vibrio cholerae strain A1552

48.241

100

0.485
  opaR Vibrio parahaemolyticus RIMD 2210633

52.514

90.404

0.475