Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   - Genome accession   NC_013798
Coordinates   50765..50809 (+) Length   15 a.a.
NCBI ID   - Uniprot ID   -
Organism   Streptococcus gallolyticus UCN34     
Function   activate transcription of comX; activate transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 45765..55809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GALLO_RS00280 (GALLO_0035) purK 45912..46985 (+) 1074 WP_009853195.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  GALLO_RS00285 (GALLO_0036) - 46996..48042 (+) 1047 WP_014619874.1 hypothetical protein -
  GALLO_RS00290 (GALLO_0037) purB 48344..49642 (+) 1299 WP_012961320.1 adenylosuccinate lyase -
  GALLO_RS00295 (GALLO_0038) comR 49789..50688 (+) 900 WP_009853198.1 helix-turn-helix domain-containing protein Regulator
  - comS 50765..50809 (+) 45 - - Regulator
  GALLO_RS00305 (GALLO_0039) - 51930..52361 (+) 432 WP_012961321.1 low molecular weight protein-tyrosine-phosphatase -
  GALLO_RS00310 (GALLO_0040) - 52381..52761 (+) 381 WP_012961322.1 membrane protein -
  GALLO_RS00315 (GALLO_0041) - 52758..54551 (+) 1794 WP_012961323.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 15 a.a.        Molecular weight: 1750.13 Da        Isoelectric Point: 5.5500

>NTDB_id=563 50765..50809(+) (comS) [Streptococcus gallolyticus UCN34]
MLNIFSIVITGWWGL

Nucleotide


Download         Length: 45 bp        

>NTDB_id=563 50765..50809(+) (comS) [Streptococcus gallolyticus UCN34]
ATGCTAAATATTTTCTCAATTGTCATAACTGGTTGGTGGGGGTTA

XIP

This gene is known to encode the precursor of σX inducing peptide (XIP), which involves in competence development. The mature XIP sequence is displayed as below:

ITGWWGL


Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Streptococcus infantarius subsp. infantarius ATCC BAA-102

53.333

100

0.533
  djlA Legionella pneumophila str. Paris

85.714

46.667

0.4
  djlA Legionella pneumophila strain ERS1305867

85.714

46.667

0.4

Multiple sequence alignment