Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   L6L54_RS16995 Genome accession   NZ_CP091682
Coordinates   3469581..3470318 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain KKo003     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3464581..3475318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6L54_RS16980 (L6L54_16980) clpC 3465035..3467608 (-) 2574 WP_001539382.1 ATP-dependent chaperone ClpB Regulator
  L6L54_RS16985 (L6L54_16985) yfiH 3467738..3468469 (-) 732 WP_000040138.1 purine nucleoside phosphorylase YfiH -
  L6L54_RS16990 (L6L54_16990) rluD 3468466..3469446 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  L6L54_RS16995 (L6L54_16995) comL 3469581..3470318 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  L6L54_RS17000 (L6L54_17000) raiA 3470588..3470929 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  L6L54_RS17005 (L6L54_17005) pheL 3471033..3471080 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  L6L54_RS17010 (L6L54_17010) pheA 3471179..3472339 (+) 1161 WP_000200106.1 bifunctional chorismate mutase/prephenate dehydratase -
  L6L54_RS17015 (L6L54_17015) tyrA 3472382..3473503 (-) 1122 WP_001539387.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  L6L54_RS17020 (L6L54_17020) aroF 3473514..3474584 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  L6L54_RS17025 (L6L54_17025) yfiL 3474794..3475159 (+) 366 WP_001298694.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=562881 L6L54_RS16995 WP_000197686.1 3469581..3470318(+) (comL) [Escherichia coli strain KKo003]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=562881 L6L54_RS16995 WP_000197686.1 3469581..3470318(+) (comL) [Escherichia coli strain KKo003]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376