Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KFU76_RS06465 Genome accession   NZ_CP074028
Coordinates   1271230..1271859 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain PK13     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1266230..1276859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFU76_RS06450 (KFU76_06390) helD 1266472..1268526 (-) 2055 WP_001315388.1 DNA helicase IV -
  KFU76_RS06455 (KFU76_06395) yccF 1268649..1269095 (+) 447 WP_001261235.1 YccF domain-containing protein -
  KFU76_RS06460 (KFU76_06400) yccS 1269105..1271267 (+) 2163 WP_000875044.1 YccS family putative transporter -
  KFU76_RS06465 (KFU76_06405) sxy/tfoX 1271230..1271859 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  KFU76_RS06470 (KFU76_06410) sulA 1272078..1272587 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  KFU76_RS06475 (KFU76_06415) ompA 1272944..1273996 (+) 1053 WP_000750419.1 porin OmpA -
  KFU76_RS06480 (KFU76_06420) matP 1274071..1274523 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  KFU76_RS06485 (KFU76_06425) ycbZ 1274709..1276469 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=562869 KFU76_RS06465 WP_000839153.1 1271230..1271859(-) (sxy/tfoX) [Escherichia coli strain PK13]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=562869 KFU76_RS06465 WP_000839153.1 1271230..1271859(-) (sxy/tfoX) [Escherichia coli strain PK13]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1