Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   L6L58_RS06505 Genome accession   NZ_CP091665
Coordinates   1363172..1364833 (-) Length   553 a.a.
NCBI ID   WP_101174660.1    Uniprot ID   -
Organism   Escherichia coli strain KOr019     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1358172..1369833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6L58_RS06485 (L6L58_06485) smpB 1361250..1361732 (-) 483 WP_000162574.1 SsrA-binding protein SmpB -
  L6L58_RS06490 (L6L58_06490) ratA 1361903..1362340 (+) 438 WP_001341638.1 type II toxin-antitoxin system toxin RatA -
  L6L58_RS06495 (L6L58_06495) yfjF 1362330..1362620 (+) 291 WP_001117838.1 RnfH family protein -
  L6L58_RS06500 (L6L58_06500) bamE 1362682..1363023 (-) 342 WP_001203437.1 outer membrane protein assembly factor BamE -
  L6L58_RS06505 (L6L58_06505) recN 1363172..1364833 (-) 1662 WP_101174660.1 DNA repair protein RecN Machinery gene
  L6L58_RS06510 (L6L58_06510) nadK 1364919..1365797 (-) 879 WP_001059169.1 NAD(+) kinase -
  L6L58_RS06515 (L6L58_06515) grpE 1365920..1366513 (+) 594 WP_001296310.1 nucleotide exchange factor GrpE -
  L6L58_RS06520 (L6L58_06520) yfjD 1366567..1367853 (-) 1287 WP_010723175.1 HlyC/CorC family transporter -
  L6L58_RS06525 (L6L58_06525) ypjD 1367874..1368665 (-) 792 WP_001338897.1 inner membrane protein YpjD -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 61351.32 Da        Isoelectric Point: 5.3374

>NTDB_id=562613 L6L58_RS06505 WP_101174660.1 1363172..1364833(-) (recN) [Escherichia coli strain KOr019]
MLAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGRAEADMVRTGAARADLCARFSLKDTPAALRWL
EENQLEDGHECLLRRVISSDGRSRGFINGTAVPLSQLRELGQLLIQIHGQHAHQLLTKPEHQKFLLDGYANETSLLQEMT
ARYQLWHQSCRDLAHHQQLSQERAARAELLQYQLKELNEFNPQPGEFEQIDEEYKRLANSGQLLTTSQNALALMADGEDA
NLQSQLYTAKQLVSELIGMDSKLSGVLDMLEEATIQIAEASDELRHYCDRLDLDPNRLFELEQRISKQISLARKHHVSPE
ALPQYYQSLLEEQQQLDDQADSQETLALAVTKHHQQALETANALHQQRQHYAEELAQLITDSMHALSMPHGQFTIDVKFD
EHHLGADGADRIEFRVTTNPGQPMQPIAKVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQL
GESTQVMCVTHLPQVAGCGHQHYFVSKETDGAMTETHMQSLNKKARLQELARLLGGSEVTRNTLANAKELLAA

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=562613 L6L58_RS06505 WP_101174660.1 1363172..1364833(-) (recN) [Escherichia coli strain KOr019]
ATGTTGGCACAACTGACCATCAGCAACTTTGCTATCGTTCGTGAGCTTGAGATTGATTTTCATAGCGGCATGACCGTAAT
AACTGGCGAGACCGGCGCGGGTAAATCTATTGCAATAGATGCCCTCGGCCTTTGTCTCGGTGGTCGCGCTGAAGCCGACA
TGGTGCGTACCGGCGCTGCTCGTGCCGACCTGTGCGCCCGTTTTTCTCTGAAAGATACGCCAGCGGCCCTGCGCTGGCTG
GAAGAAAACCAGCTTGAAGACGGGCATGAATGTTTGCTTCGTCGCGTAATCAGCAGCGATGGTCGCTCCCGTGGTTTCAT
CAACGGTACAGCGGTTCCTCTGTCACAACTGCGCGAACTGGGTCAGTTGCTGATTCAGATCCATGGTCAGCACGCTCATC
AATTACTCACCAAACCTGAGCACCAAAAATTCCTGCTTGATGGCTATGCCAATGAAACCTCTCTACTTCAGGAAATGACC
GCACGTTATCAGTTGTGGCATCAAAGCTGCCGTGACCTCGCGCATCATCAACAGTTAAGTCAGGAACGTGCTGCCCGTGC
GGAGCTGCTGCAATACCAATTAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGAGTTTGAGCAAATCGACGAAGAGT
ACAAACGTCTGGCGAACAGCGGTCAATTGCTGACCACCAGCCAGAATGCATTGGCATTAATGGCCGATGGTGAAGACGCA
AACCTGCAAAGTCAGCTTTACACGGCTAAACAACTGGTAAGCGAATTGATTGGCATGGACAGCAAACTGTCCGGCGTACT
TGATATGCTGGAAGAAGCTACCATCCAGATTGCTGAAGCCAGCGATGAACTGCGCCACTACTGCGATCGTCTGGACCTCG
ATCCTAACCGACTGTTTGAACTTGAACAGCGCATCTCAAAACAGATTTCGCTGGCACGTAAACATCACGTCAGCCCTGAG
GCATTGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGATCAGGCCGACTCACAAGAAACGCTCGC
GCTGGCGGTAACGAAACATCATCAGCAGGCACTAGAAACCGCGAACGCATTACACCAGCAACGCCAGCACTATGCAGAAG
AACTTGCACAGCTGATCACCGACAGTATGCATGCACTCTCTATGCCGCATGGGCAGTTTACGATTGATGTTAAATTTGAC
GAGCATCACCTGGGCGCTGACGGCGCCGATCGTATTGAATTTCGGGTAACCACCAACCCAGGTCAGCCAATGCAGCCTAT
TGCCAAAGTCGCATCCGGTGGTGAATTGTCACGCATCGCATTGGCAATTCAGGTCATCACGGCGCGTAAAATGGAAACCC
CGGCACTGATTTTTGATGAAGTGGATGTAGGGATTAGCGGTCCAACAGCGGCAGTTGTCGGCAAACTGCTGCGTCAACTC
GGCGAATCAACTCAGGTGATGTGTGTTACCCACCTGCCACAAGTCGCGGGATGTGGTCATCAACACTATTTTGTCAGCAA
AGAAACCGATGGTGCGATGACAGAAACGCATATGCAATCCCTGAATAAAAAAGCGCGGTTACAAGAGCTGGCGCGCCTGC
TTGGTGGCAGTGAAGTCACACGTAATACACTGGCGAATGCGAAAGAACTGCTTGCAGCGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Neisseria gonorrhoeae strain FA1090

37.794

100

0.378
  recN Bacillus subtilis subsp. subtilis str. 168

35.192

100

0.365