Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KFU60_RS10190 Genome accession   NZ_CP073916
Coordinates   2110752..2111348 (+) Length   198 a.a.
NCBI ID   WP_003662304.1    Uniprot ID   -
Organism   Lacticaseibacillus paracasei subsp. tolerans strain 2A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2105752..2116348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFU60_RS10170 (KFU60_10170) gyrA 2106253..2108874 (+) 2622 WP_003662307.1 DNA gyrase subunit A -
  KFU60_RS10175 (KFU60_10175) deoC 2108979..2109683 (-) 705 WP_108299099.1 deoxyribose-phosphate aldolase -
  KFU60_RS10180 (KFU60_10180) ssb 2109866..2110297 (+) 432 WP_003568458.1 single-stranded DNA-binding protein -
  KFU60_RS10185 (KFU60_10185) rpsF 2110425..2110721 (+) 297 WP_003568460.1 30S ribosomal protein S6 -
  KFU60_RS10190 (KFU60_10190) ssb 2110752..2111348 (+) 597 WP_003662304.1 single-stranded DNA-binding protein Machinery gene
  KFU60_RS10195 (KFU60_10195) rpsR 2111435..2111671 (+) 237 WP_003568467.1 30S ribosomal protein S18 -
  KFU60_RS10200 (KFU60_10200) - 2112113..2113591 (+) 1479 WP_108299100.1 cytochrome ubiquinol oxidase subunit I -
  KFU60_RS10205 (KFU60_10205) cydB 2113584..2114603 (+) 1020 WP_108299101.1 cytochrome d ubiquinol oxidase subunit II -
  KFU60_RS10210 (KFU60_10210) - 2114630..2114824 (+) 195 WP_003568474.1 hypothetical protein -
  KFU60_RS10215 (KFU60_10215) - 2114897..2115490 (-) 594 WP_011673933.1 TMEM175 family protein -
  KFU60_RS10220 (KFU60_10220) - 2115887..2116282 (-) 396 WP_003584064.1 hypothetical protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21148.91 Da        Isoelectric Point: 4.9056

>NTDB_id=562286 KFU60_RS10190 WP_003662304.1 2110752..2111348(+) (ssb) [Lacticaseibacillus paracasei subsp. tolerans strain 2A]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSMVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPNNASSPNPGQ
NPAASQNQGGNSAANPANPDPFANNGKPIDISDDDLPF

Nucleotide


Download         Length: 597 bp        

>NTDB_id=562286 KFU60_RS10190 WP_003662304.1 2110752..2111348(+) (ssb) [Lacticaseibacillus paracasei subsp. tolerans strain 2A]
ATGCTTAACAGTGTTGCATTGACAGGTCGATTAACCAGAGACGTTGATTTGCGTTACACGCAAAGTGGCACGGCTGTCGG
TTCTTTCACGCTGGCCGTTGACCGCCAGTTCCGCAGTGCAAACGGCGAACGTGAAACTGACTTCATCAATTGTGTGATCT
GGCGTAAGTCTGCAGAGAACTTTGCAAACTTCACCAAAAAGGGATCCATGGTTGGAGTTGAAGGCCATATCCAAACGCGT
ACGTATGATAACGCGCAAGGACAAAAGGTCTACGTGACCGAAGTCGTCGTTGAAAACTTTGCGTTGCTGGAATCCCGGGC
AACGACTCAACAGCGGCCGTCCGAACCGGCAAATCCAGCTGGCCAAGGTAATCAGAACTATGGCGGCGGGCAGCAGTTTG
GCAATAACCAACCGCAGAATCCGCCAAGTTTTGGTTCACAAGGCGCCCCGAACAATGCATCATCACCGAATCCGGGTCAA
AATCCGGCAGCAAGTCAGAACCAAGGAGGCAACTCCGCGGCTAACCCTGCTAATCCCGATCCGTTTGCTAATAATGGCAA
GCCGATCGACATTTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.296

100

0.596
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

100

0.5