Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   L6L63_RS06845 Genome accession   NZ_CP091652
Coordinates   1403676..1404413 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain KMi025     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1398676..1409413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6L63_RS06830 (L6L63_06830) clpC 1399130..1401703 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  L6L63_RS06835 (L6L63_06835) yfiH 1401833..1402564 (-) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  L6L63_RS06840 (L6L63_06840) rluD 1402561..1403541 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  L6L63_RS06845 (L6L63_06845) comL 1403676..1404413 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  L6L63_RS06850 (L6L63_06850) raiA 1404684..1405025 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  L6L63_RS06855 (L6L63_06855) pheL 1405129..1405176 (+) 48 WP_010723158.1 phe operon leader peptide -
  L6L63_RS06860 (L6L63_06860) pheA 1405275..1406435 (+) 1161 WP_023281432.1 bifunctional chorismate mutase/prephenate dehydratase -
  L6L63_RS06865 (L6L63_06865) tyrA 1406478..1407599 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  L6L63_RS06870 (L6L63_06870) aroF 1407610..1408680 (-) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  L6L63_RS06875 (L6L63_06875) yfiL 1408890..1409255 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=562283 L6L63_RS06845 WP_000197686.1 1403676..1404413(+) (comL) [Escherichia coli strain KMi025]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=562283 L6L63_RS06845 WP_000197686.1 1403676..1404413(+) (comL) [Escherichia coli strain KMi025]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376