Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | KFU59_RS12460 | Genome accession | NZ_CP073915 |
| Coordinates | 2664186..2664776 (+) | Length | 196 a.a. |
| NCBI ID | WP_005690377.1 | Uniprot ID | A0A508YN23 |
| Organism | Lacticaseibacillus rhamnosus strain AS | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 2661666..2679119 | 2664186..2664776 | within | 0 |
Gene organization within MGE regions
Location: 2661666..2679119
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KFU59_RS12430 (KFU59_12430) | - | 2661666..2661764 (+) | 99 | Protein_2408 | single-stranded DNA-binding protein | - |
| KFU59_RS12435 (KFU59_12435) | - | 2662144..2662371 (+) | 228 | WP_012807316.1 | hypothetical protein | - |
| KFU59_RS12440 (KFU59_12440) | - | 2662466..2662978 (+) | 513 | WP_012807317.1 | PedC/BrcD family bacteriocin maturation disulfide isomerase | - |
| KFU59_RS12445 (KFU59_12445) | - | 2663106..2663192 (-) | 87 | Protein_2411 | deoxyribose-phosphate aldolase | - |
| KFU59_RS12450 (KFU59_12450) | ssb | 2663302..2663733 (+) | 432 | WP_005690380.1 | single-stranded DNA-binding protein | - |
| KFU59_RS12455 (KFU59_12455) | rpsF | 2663860..2664156 (+) | 297 | WP_005685677.1 | 30S ribosomal protein S6 | - |
| KFU59_RS12460 (KFU59_12460) | ssb | 2664186..2664776 (+) | 591 | WP_005690377.1 | single-stranded DNA-binding protein | Machinery gene |
| KFU59_RS12465 (KFU59_12465) | rpsR | 2664868..2665104 (+) | 237 | WP_003568467.1 | 30S ribosomal protein S18 | - |
| KFU59_RS12470 (KFU59_12470) | - | 2665498..2666004 (-) | 507 | WP_005685670.1 | type 1 glutamine amidotransferase domain-containing protein | - |
| KFU59_RS12475 (KFU59_12475) | - | 2666315..2667793 (+) | 1479 | WP_012807318.1 | cytochrome ubiquinol oxidase subunit I | - |
| KFU59_RS12480 (KFU59_12480) | cydB | 2667786..2668805 (+) | 1020 | WP_211751440.1 | cytochrome d ubiquinol oxidase subunit II | - |
| KFU59_RS12485 (KFU59_12485) | - | 2668845..2669039 (+) | 195 | WP_005707490.1 | hypothetical protein | - |
| KFU59_RS12490 (KFU59_12490) | - | 2669118..2669417 (-) | 300 | WP_249146480.1 | CAAX protease family protein | - |
| KFU59_RS12495 (KFU59_12495) | - | 2669528..2670544 (+) | 1017 | Protein_2421 | IS30 family transposase | - |
| KFU59_RS12500 (KFU59_12500) | - | 2671580..2672257 (+) | 678 | WP_211751441.1 | CPBP family intramembrane glutamic endopeptidase | - |
| KFU59_RS12505 (KFU59_12505) | - | 2672801..2674216 (-) | 1416 | WP_015764803.1 | IS5-like element ISLrh2 family transposase | - |
| KFU59_RS12510 (KFU59_12510) | - | 2674413..2675120 (+) | 708 | WP_249146481.1 | CPBP family intramembrane glutamic endopeptidase | - |
| KFU59_RS12515 (KFU59_12515) | - | 2675463..2675726 (+) | 264 | WP_014568883.1 | hypothetical protein | - |
| KFU59_RS12520 (KFU59_12520) | - | 2675867..2676391 (-) | 525 | WP_014568884.1 | ABC transporter permease | - |
| KFU59_RS12525 (KFU59_12525) | - | 2676578..2677996 (+) | 1419 | WP_003605947.1 | IS5-like element ISLrh3 family transposase | - |
| KFU59_RS12530 (KFU59_12530) | - | 2678211..2679119 (-) | 909 | WP_211751442.1 | ABC transporter ATP-binding protein | - |
Sequence
Protein
Download Length: 196 a.a. Molecular weight: 20905.63 Da Isoelectric Point: 4.9056
>NTDB_id=562259 KFU59_RS12460 WP_005690377.1 2664186..2664776(+) (ssb) [Lacticaseibacillus rhamnosus strain AS]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSLVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPSNAPSSNPGQ
SPAAGQNQGNNGNAANPDPFANNGKPIDISDDDLPF
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSLVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPSNAPSSNPGQ
SPAAGQNQGNNGNAANPDPFANNGKPIDISDDDLPF
Nucleotide
Download Length: 591 bp
>NTDB_id=562259 KFU59_RS12460 WP_005690377.1 2664186..2664776(+) (ssb) [Lacticaseibacillus rhamnosus strain AS]
ATGCTTAACAGTGTTGCATTGACAGGTCGTTTAACCAGAGATGTTGACTTGCGCTATACGCAAAGTGGGACAGCTGTCGG
TTCATTCACTTTGGCCGTTGATCGCCAGTTCCGCAGTGCAAACGGCGAACGAGAAACCGACTTCATCAATTGTGTGATCT
GGCGTAAGTCAGCGGAGAATTTCGCTAACTTTACCAAGAAGGGATCATTGGTTGGTGTTGAAGGTCACATTCAAACACGT
ACTTACGATAATGCGCAAGGACAGAAAGTTTATGTGACCGAAGTTGTCGTTGAAAACTTTGCGTTACTGGAATCACGGGC
AACCACCCAACAGCGGCCATCTGAACCTGCTAATCCAGCAGGTCAGGGAAATCAGAACTATGGCGGGGGACAGCAGTTTG
GTAACAACCAGCCGCAAAATCCGCCTAGCTTTGGCTCTCAAGGCGCCCCAAGTAATGCACCATCATCGAATCCGGGACAA
AGCCCGGCAGCAGGTCAGAACCAAGGTAACAATGGTAATGCTGCTAATCCTGATCCATTTGCCAATAACGGCAAACCGAT
CGACATTTCCGATGATGATCTGCCATTCTAA
ATGCTTAACAGTGTTGCATTGACAGGTCGTTTAACCAGAGATGTTGACTTGCGCTATACGCAAAGTGGGACAGCTGTCGG
TTCATTCACTTTGGCCGTTGATCGCCAGTTCCGCAGTGCAAACGGCGAACGAGAAACCGACTTCATCAATTGTGTGATCT
GGCGTAAGTCAGCGGAGAATTTCGCTAACTTTACCAAGAAGGGATCATTGGTTGGTGTTGAAGGTCACATTCAAACACGT
ACTTACGATAATGCGCAAGGACAGAAAGTTTATGTGACCGAAGTTGTCGTTGAAAACTTTGCGTTACTGGAATCACGGGC
AACCACCCAACAGCGGCCATCTGAACCTGCTAATCCAGCAGGTCAGGGAAATCAGAACTATGGCGGGGGACAGCAGTTTG
GTAACAACCAGCCGCAAAATCCGCCTAGCTTTGGCTCTCAAGGCGCCCCAAGTAATGCACCATCATCGAATCCGGGACAA
AGCCCGGCAGCAGGTCAGAACCAAGGTAACAATGGTAATGCTGCTAATCCTGATCCATTTGCCAATAACGGCAAACCGAT
CGACATTTCCGATGATGATCTGCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
61.735 |
100 |
0.617 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
50 |
100 |
0.5 |