Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   L4998_RS07385 Genome accession   NZ_CP091644
Coordinates   1430473..1431069 (-) Length   198 a.a.
NCBI ID   WP_002779313.1    Uniprot ID   A0ABP2NPG9
Organism   Campylobacter coli strain YH504     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1425473..1436069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L4998_RS07365 (L4998_07365) - 1426228..1426992 (+) 765 WP_002781156.1 TIGR02757 family protein -
  L4998_RS07370 (L4998_07370) - 1426995..1427759 (+) 765 WP_002784060.1 TSUP family transporter -
  L4998_RS07375 (L4998_07375) ctsF 1427756..1428931 (-) 1176 WP_002781160.1 type II secretion system F family protein Machinery gene
  L4998_RS07380 (L4998_07380) ctsE 1428918..1430480 (-) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene
  L4998_RS07385 (L4998_07385) ctsX 1430473..1431069 (-) 597 WP_002779313.1 CDC27 family protein Machinery gene
  L4998_RS07390 (L4998_07390) ctsP 1431066..1431662 (-) 597 WP_002779314.1 ATP-binding protein Machinery gene
  L4998_RS07395 (L4998_07395) ctsD 1431655..1433073 (-) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  L4998_RS07400 (L4998_07400) ctsR 1433051..1433362 (-) 312 WP_002795361.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23760.21 Da        Isoelectric Point: 5.2295

>NTDB_id=562171 L4998_RS07385 WP_002779313.1 1430473..1431069(-) (ctsX) [Campylobacter coli strain YH504]
MNIEERVRELEDKYKRYLLKKYFKFLFIFAILIACMLISFFMVQDFYKQKALALEALEYKKTLNWQITQAQIANEKNKIL
QERLSKDESKDELEEELKTQIDIYSKILNISDLKRSFYQNPSYQKAMNLATQYYENKDYEKSIFWSLKANDIDRKNSDSW
VLFAKAKQALGKDEEAKQALDTYVSYYGLIEFDKEIDD

Nucleotide


Download         Length: 597 bp        

>NTDB_id=562171 L4998_RS07385 WP_002779313.1 1430473..1431069(-) (ctsX) [Campylobacter coli strain YH504]
ATGAATATAGAAGAAAGAGTGCGCGAGCTTGAGGATAAATATAAAAGATATTTATTGAAAAAATATTTTAAGTTTTTATT
TATCTTTGCCATTTTGATAGCATGCATGCTTATAAGCTTTTTTATGGTGCAAGATTTTTACAAACAAAAGGCCTTAGCTT
TAGAAGCTTTAGAATATAAAAAAACACTCAATTGGCAAATTACACAAGCGCAAATTGCAAATGAAAAAAATAAAATTTTA
CAAGAAAGATTATCCAAAGATGAAAGCAAAGATGAGTTAGAAGAGGAGTTGAAAACTCAAATTGATATTTATTCTAAGAT
TTTAAATATAAGTGATTTAAAAAGGAGTTTTTACCAAAATCCAAGCTATCAAAAAGCCATGAATTTAGCTACTCAGTATT
ATGAAAACAAAGATTATGAAAAGTCTATTTTTTGGTCTTTAAAAGCCAATGACATCGATAGAAAAAATTCAGACTCATGG
GTTTTATTTGCCAAGGCTAAACAAGCTTTAGGAAAAGATGAGGAGGCTAAGCAAGCTTTGGATACTTATGTAAGTTATTA
TGGCTTGATTGAATTTGATAAGGAAATAGATGATTGA

Domains

Predicted by InterProScan.

Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3)

(116-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

55.128

78.788

0.434