Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   L4998_RS05970 Genome accession   NZ_CP091644
Coordinates   1146964..1147830 (-) Length   288 a.a.
NCBI ID   WP_002777377.1    Uniprot ID   A0ABP2NR16
Organism   Campylobacter coli strain YH504     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1141964..1152830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L4998_RS05945 (L4998_05945) radA/sms 1142445..1143785 (-) 1341 WP_002777369.1 DNA repair protein RadA Machinery gene
  L4998_RS05950 (L4998_05950) - 1143921..1144769 (+) 849 WP_002797265.1 carbon-nitrogen hydrolase family protein -
  L4998_RS05955 (L4998_05955) - 1144772..1145653 (+) 882 WP_002781290.1 polysaccharide deacetylase -
  L4998_RS05960 (L4998_05960) - 1145695..1146030 (+) 336 WP_002777373.1 hypothetical protein -
  L4998_RS05965 (L4998_05965) - 1146023..1146967 (+) 945 WP_002777375.1 GTP-binding protein -
  L4998_RS05970 (L4998_05970) pilA 1146964..1147830 (-) 867 WP_002777377.1 signal recognition particle-docking protein FtsY Machinery gene
  L4998_RS05975 (L4998_05975) - 1147830..1148387 (-) 558 WP_002795294.1 TlpA disulfide reductase family protein -
  L4998_RS05980 (L4998_05980) - 1148468..1149094 (+) 627 WP_002777380.1 5-formyltetrahydrofolate cyclo-ligase -
  L4998_RS05985 (L4998_05985) rny 1149015..1150568 (+) 1554 WP_002777382.1 ribonuclease Y -
  L4998_RS05990 (L4998_05990) - 1150579..1151136 (+) 558 WP_002788123.1 DedA family protein -
  L4998_RS05995 (L4998_05995) - 1151136..1152395 (+) 1260 WP_002777385.1 ComEC/Rec2 family competence protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31816.85 Da        Isoelectric Point: 5.1228

>NTDB_id=562158 L4998_RS05970 WP_002777377.1 1146964..1147830(-) (pilA) [Campylobacter coli strain YH504]
MFDFFKKGLAKTLESIVGVKGENKKITKDLLEEILLEADVAYEIVEEIIYYLPPSDEVKKEDLKRVMGSYFLYENKEFLD
EKPFVELILGVNGAGKTTSIAKLANLYKSQGQKVILGACDTFRAGAIEQLRLWSEKVGVDIVLTQQGHDPSAVAFDTISK
ARAKGFDKVIIDTAGRLQNQKNLANELEKIVRISAKAMPHAPHRKILVLDGTQGNAGILQAKAFNELVQLDGVIITKLDG
TAKGGALFSIARELELPILYIGVGEKMQDLIEFNAQNFLDTLLEGVFD

Nucleotide


Download         Length: 867 bp        

>NTDB_id=562158 L4998_RS05970 WP_002777377.1 1146964..1147830(-) (pilA) [Campylobacter coli strain YH504]
ATGTTTGATTTTTTTAAAAAAGGACTTGCAAAAACCCTTGAAAGTATAGTGGGTGTTAAAGGTGAAAATAAAAAAATTAC
CAAAGATTTACTAGAGGAAATTTTACTTGAAGCAGATGTGGCGTATGAGATCGTAGAAGAAATCATTTATTATTTACCAC
CCAGTGATGAGGTTAAAAAAGAAGATTTAAAGCGTGTGATGGGTTCTTATTTTCTTTACGAAAATAAAGAATTCTTAGAT
GAAAAGCCTTTTGTGGAGCTTATTTTAGGGGTAAATGGCGCGGGTAAAACCACGAGTATAGCTAAGCTTGCTAATTTATA
CAAAAGCCAAGGTCAAAAAGTGATTTTAGGCGCTTGTGATACTTTTAGGGCAGGGGCGATAGAGCAGCTAAGACTTTGGT
CTGAAAAAGTAGGGGTAGATATAGTTTTAACCCAACAAGGTCATGATCCTTCGGCGGTTGCTTTTGATACTATTAGCAAG
GCTAGAGCTAAGGGTTTTGATAAGGTTATCATCGATACAGCGGGTCGTTTGCAAAATCAAAAAAATTTAGCCAATGAGCT
AGAGAAAATCGTTAGAATTTCGGCTAAAGCTATGCCTCATGCCCCGCATAGAAAAATTTTAGTACTTGATGGCACTCAAG
GCAATGCCGGCATTTTACAAGCTAAAGCTTTTAATGAACTTGTTCAGCTTGATGGAGTTATTATTACTAAACTTGATGGC
ACAGCAAAGGGTGGAGCGCTTTTTAGTATAGCGCGTGAATTAGAACTTCCTATTTTGTATATAGGGGTGGGTGAAAAAAT
GCAAGATTTGATAGAATTTAATGCACAAAATTTCTTAGACACACTTTTAGAGGGTGTTTTTGATTAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(84-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

42.244

100

0.444