Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   L4998_RS05945 Genome accession   NZ_CP091644
Coordinates   1142445..1143785 (-) Length   446 a.a.
NCBI ID   WP_002777369.1    Uniprot ID   A0ABN0EPA8
Organism   Campylobacter coli strain YH504     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1137445..1148785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L4998_RS05920 (L4998_05920) - 1137491..1138261 (+) 771 WP_002781303.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  L4998_RS05925 (L4998_05925) metE 1138284..1140548 (+) 2265 WP_002777360.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  L4998_RS05930 (L4998_05930) metF 1140558..1141406 (+) 849 WP_002794477.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  L4998_RS05935 (L4998_05935) - 1141416..1141616 (-) 201 WP_002777366.1 hypothetical protein -
  L4998_RS05940 (L4998_05940) - 1141613..1142293 (-) 681 WP_002777368.1 F0F1 ATP synthase subunit A -
  L4998_RS05945 (L4998_05945) radA/sms 1142445..1143785 (-) 1341 WP_002777369.1 DNA repair protein RadA Machinery gene
  L4998_RS05950 (L4998_05950) - 1143921..1144769 (+) 849 WP_002797265.1 carbon-nitrogen hydrolase family protein -
  L4998_RS05955 (L4998_05955) - 1144772..1145653 (+) 882 WP_002781290.1 polysaccharide deacetylase -
  L4998_RS05960 (L4998_05960) - 1145695..1146030 (+) 336 WP_002777373.1 hypothetical protein -
  L4998_RS05965 (L4998_05965) - 1146023..1146967 (+) 945 WP_002777375.1 GTP-binding protein -
  L4998_RS05970 (L4998_05970) pilA 1146964..1147830 (-) 867 WP_002777377.1 signal recognition particle-docking protein FtsY Machinery gene
  L4998_RS05975 (L4998_05975) - 1147830..1148387 (-) 558 WP_002795294.1 TlpA disulfide reductase family protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49120.03 Da        Isoelectric Point: 6.9145

>NTDB_id=562157 L4998_RS05945 WP_002777369.1 1142445..1143785(-) (radA/sms) [Campylobacter coli strain YH504]
MAKNKILFECQACGNQQSKWLGKCPECGSWDSFIELKSEQIKVLKEIAQASTKASEAICIEDVELEHFSRCSTDDDELDL
VLGGGLVEGSLVLIGGSPGVGKSTLLLKIASNLAKKNKKVLYVSGEESKAQIKLRADRLEANTPNLFLLTELCLENILEE
LHKKNYEILIIDSIQTLYSNKIASAAGSITQVREITFELMRVSKTYNISTFIIGHITKEGAIAGPRVLEHMVDVVLYFEG
DATKEIRLLRGFKNRFGGTSEVGIFEMTPKGLISAKDLANRFFTRGKATSGSALGVVMEGSRALVLEVQALVCESSYPKR
SATGYEKNRLDMLLALLERKLEIPLGHYDVFVNISGGVRVNETAADLAVVAAIISSFKNRPLSKDCVFIGELSLNGEIRE
VFSLDTRLKEAKMQKFKNAIIPSKPLEDVGLKCFVAKELAQVLEWM

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=562157 L4998_RS05945 WP_002777369.1 1142445..1143785(-) (radA/sms) [Campylobacter coli strain YH504]
ATGGCTAAAAATAAAATTCTTTTTGAATGCCAAGCTTGCGGAAATCAGCAAAGCAAATGGCTTGGAAAATGTCCTGAGTG
TGGTTCTTGGGATAGTTTTATAGAATTAAAATCTGAACAAATTAAAGTTTTAAAAGAAATCGCACAAGCAAGTACAAAAG
CAAGCGAGGCTATCTGTATAGAAGATGTGGAGCTCGAGCATTTTTCAAGGTGTAGCACTGATGATGATGAGCTGGATTTG
GTTTTAGGTGGAGGGCTTGTTGAGGGTTCTTTGGTGCTTATAGGTGGTAGCCCTGGGGTTGGCAAATCTACACTTTTACT
AAAGATTGCTTCTAATTTGGCTAAAAAAAATAAAAAAGTTCTTTATGTAAGTGGAGAAGAAAGTAAGGCGCAAATCAAAT
TAAGAGCCGATCGTCTTGAGGCTAATACTCCTAATTTATTTTTACTTACAGAGCTTTGTCTTGAAAATATTTTAGAAGAA
TTGCATAAGAAAAATTATGAAATTCTTATCATCGACTCCATACAAACCTTATATTCAAATAAAATTGCTTCAGCGGCTGG
AAGTATCACTCAAGTGCGCGAGATCACTTTTGAACTTATGCGAGTAAGCAAAACTTACAATATCAGCACTTTTATAATAG
GACATATCACCAAAGAAGGAGCCATAGCAGGCCCTAGGGTTTTAGAGCATATGGTCGATGTGGTGCTTTATTTTGAAGGG
GATGCAACTAAAGAAATCAGGCTTTTAAGGGGTTTTAAAAATCGCTTTGGTGGCACAAGCGAGGTGGGAATTTTTGAAAT
GACTCCTAAGGGTTTAATTAGTGCAAAAGATTTAGCCAATCGTTTTTTTACGCGAGGTAAAGCTACTTCAGGCAGTGCTT
TAGGTGTTGTAATGGAGGGTTCTCGTGCTTTGGTTTTAGAGGTGCAAGCTCTAGTGTGCGAGAGTTCTTATCCTAAACGC
AGTGCCACAGGCTATGAAAAAAATCGTCTTGATATGCTTTTGGCTTTACTTGAAAGAAAATTAGAAATTCCTCTTGGTCA
TTATGATGTTTTTGTAAATATTAGCGGTGGAGTAAGGGTAAATGAAACTGCGGCTGATTTGGCTGTGGTTGCGGCTATTA
TTTCTAGTTTTAAAAATCGCCCTTTGAGTAAGGATTGTGTTTTTATAGGGGAGTTGAGTTTAAATGGAGAAATAAGAGAA
GTTTTTAGTCTTGATACCCGTTTAAAAGAAGCTAAAATGCAAAAATTTAAAAATGCTATTATTCCATCTAAACCTTTAGA
AGATGTAGGGCTTAAATGCTTTGTAGCCAAAGAGCTTGCCCAAGTTTTAGAATGGATGTGA

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(71-220)

Subunit ChlI of Mg-chelatase (ChlI)

(347-423)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

45.37

96.861

0.439
  radA Streptococcus pneumoniae Rx1

44.47

97.309

0.433
  radA Streptococcus pneumoniae D39

44.47

97.309

0.433
  radA Streptococcus pneumoniae R6

44.47

97.309

0.433
  radA Streptococcus pneumoniae TIGR4

44.47

97.309

0.433
  radA Streptococcus mitis SK321

44.444

96.861

0.43
  radA Streptococcus mitis NCTC 12261

44.444

96.861

0.43