Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   L4998_RS05320 Genome accession   NZ_CP091644
Coordinates   1019633..1020181 (+) Length   182 a.a.
NCBI ID   WP_002777084.1    Uniprot ID   A0ABN0ENS3
Organism   Campylobacter coli strain YH504     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1014633..1025181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L4998_RS05295 (L4998_05295) rseP 1014748..1015851 (+) 1104 WP_058001840.1 RIP metalloprotease RseP -
  L4998_RS05300 (L4998_05300) - 1015848..1016703 (+) 856 Protein_1025 VirK family antimicrobial peptide resistance protein -
  L4998_RS05305 (L4998_05305) - 1016696..1017697 (-) 1002 WP_002777078.1 sugar phosphate isomerase/epimerase -
  L4998_RS05310 (L4998_05310) - 1017697..1018968 (-) 1272 WP_002777080.1 MFS transporter -
  L4998_RS05315 (L4998_05315) rpsF 1019247..1019624 (+) 378 WP_002777082.1 30S ribosomal protein S6 -
  L4998_RS05320 (L4998_05320) ssb 1019633..1020181 (+) 549 WP_002777084.1 single-stranded DNA-binding protein Machinery gene
  L4998_RS05325 (L4998_05325) rpsR 1020192..1020452 (+) 261 WP_002777087.1 30S ribosomal protein S18 -
  L4998_RS05330 (L4998_05330) lon 1020509..1022884 (-) 2376 WP_057032694.1 endopeptidase La -
  L4998_RS05335 (L4998_05335) bamD 1022900..1023547 (-) 648 WP_002803789.1 outer membrane protein assembly factor BamD -
  L4998_RS05340 (L4998_05340) fliW 1023711..1024100 (+) 390 WP_002777093.1 flagellar assembly protein FliW -
  L4998_RS05345 (L4998_05345) proC 1024100..1024837 (+) 738 WP_002824859.1 pyrroline-5-carboxylate reductase Machinery gene
  L4998_RS05350 (L4998_05350) ctsT 1024834..1025139 (+) 306 WP_052784994.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20733.61 Da        Isoelectric Point: 4.8501

>NTDB_id=562149 L4998_RS05320 WP_002777084.1 1019633..1020181(+) (ssb) [Campylobacter coli strain YH504]
MFNKVVLVGNLTRDIEMRYGQNGNAIGASAIAVTRRFTTNGERREETCFIDISFYGRTAEVANQYLSKGSKVLIEGRLRF
EQWNDQNGQMRSKHSVQVENMEMLGNNPQQGGNFNNGGNNYGANNNYSNYENQSYDPYMSENNFKKAPQQAQTKTQNPNQ
NQEKIKEIDVDAYDSDDTDLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=562149 L4998_RS05320 WP_002777084.1 1019633..1020181(+) (ssb) [Campylobacter coli strain YH504]
ATGTTTAATAAAGTTGTTTTGGTAGGTAATCTAACACGCGATATAGAAATGCGTTATGGTCAAAATGGAAACGCTATCGG
AGCTTCGGCTATCGCAGTAACAAGAAGGTTTACCACAAATGGAGAAAGACGAGAAGAAACTTGCTTTATCGATATTAGCT
TTTATGGTCGTACTGCTGAAGTAGCAAACCAATATCTCTCTAAGGGTTCTAAAGTCCTTATAGAAGGTCGTTTAAGATTT
GAACAATGGAATGATCAAAATGGACAAATGCGCTCTAAGCACAGCGTTCAAGTTGAAAATATGGAAATGCTAGGAAACAA
TCCTCAACAAGGTGGAAATTTTAACAATGGTGGAAATAATTATGGAGCTAATAATAATTATTCAAATTATGAAAACCAAA
GTTATGATCCTTATATGAGTGAAAATAATTTCAAAAAAGCTCCACAGCAAGCACAAACAAAAACACAAAATCCTAACCAA
AACCAAGAAAAAATTAAAGAAATTGATGTTGATGCTTATGATAGCGATGACACCGATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

37.5

100

0.379