Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsT   Type   Machinery gene
Locus tag   L4998_RS05350 Genome accession   NZ_CP091644
Coordinates   1024834..1025139 (+) Length   101 a.a.
NCBI ID   WP_052784994.1    Uniprot ID   -
Organism   Campylobacter coli strain YH504     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1019834..1030139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L4998_RS05325 (L4998_05325) rpsR 1020192..1020452 (+) 261 WP_002777087.1 30S ribosomal protein S18 -
  L4998_RS05330 (L4998_05330) lon 1020509..1022884 (-) 2376 WP_057032694.1 endopeptidase La -
  L4998_RS05335 (L4998_05335) bamD 1022900..1023547 (-) 648 WP_002803789.1 outer membrane protein assembly factor BamD -
  L4998_RS05340 (L4998_05340) fliW 1023711..1024100 (+) 390 WP_002777093.1 flagellar assembly protein FliW -
  L4998_RS05345 (L4998_05345) proC 1024100..1024837 (+) 738 WP_002824859.1 pyrroline-5-carboxylate reductase Machinery gene
  L4998_RS05350 (L4998_05350) ctsT 1024834..1025139 (+) 306 WP_052784994.1 hypothetical protein Machinery gene
  L4998_RS05355 (L4998_05355) - 1025132..1025800 (+) 669 WP_058001839.1 hypothetical protein -
  L4998_RS05360 (L4998_05360) - 1025797..1026249 (+) 453 WP_002777117.1 hypothetical protein -
  L4998_RS05365 (L4998_05365) - 1026242..1026871 (-) 630 WP_002824854.1 uroporphyrinogen-III synthase -
  L4998_RS05370 (L4998_05370) thiE 1026849..1027481 (-) 633 WP_002824853.1 thiamine phosphate synthase -
  L4998_RS05375 (L4998_05375) thiD 1027471..1028283 (-) 813 WP_002824851.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  L4998_RS05380 (L4998_05380) - 1028283..1028966 (-) 684 WP_002824849.1 3-methyladenine DNA glycosylase -
  L4998_RS05385 (L4998_05385) - 1028963..1029724 (-) 762 WP_025399045.1 ATP-binding protein -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 12274.08 Da        Isoelectric Point: 6.0617

>NTDB_id=562151 L4998_RS05350 WP_052784994.1 1024834..1025139(+) (ctsT) [Campylobacter coli strain YH504]
MKVAFSLLELILCIIILGLIFTSISKLFYQLNDNHDYLNYFERLYTLQDKLYTDPHQRDIKLHIQNLKTFDLKENSANDN
IFQFKKLHIQNQDYSLYFYDE

Nucleotide


Download         Length: 306 bp        

>NTDB_id=562151 L4998_RS05350 WP_052784994.1 1024834..1025139(+) (ctsT) [Campylobacter coli strain YH504]
ATGAAAGTTGCATTCTCGCTTTTAGAATTAATTCTTTGTATAATTATCCTAGGATTAATTTTTACAAGTATTTCTAAATT
ATTTTATCAGCTAAATGACAATCATGATTATTTAAATTATTTTGAAAGATTATACACACTGCAAGATAAACTTTATACCG
ATCCTCATCAAAGAGATATAAAACTTCATATACAGAATTTAAAAACTTTTGATCTTAAAGAAAACTCTGCAAATGATAAT
ATCTTTCAATTTAAAAAATTACATATTCAAAATCAAGATTACTCCCTATATTTTTACGATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsT Campylobacter jejuni subsp. jejuni 81-176

48.98

97.03

0.475