Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | CSPA_RS28310 | Genome accession | NC_020291 |
| Coordinates | 6515086..6515532 (-) | Length | 148 a.a. |
| NCBI ID | WP_015395848.1 | Uniprot ID | M1MYD5 |
| Organism | Clostridium saccharoperbutylacetonicum N1-4(HMT) | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 6510086..6520532
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CSPA_RS28290 (Cspa_c58190) | rplI | 6511892..6512338 (-) | 447 | WP_015395844.1 | 50S ribosomal protein L9 | - |
| CSPA_RS28295 (Cspa_c58200) | - | 6512341..6514281 (-) | 1941 | WP_015395845.1 | DHH family phosphoesterase | - |
| CSPA_RS28300 (Cspa_c58210) | - | 6514304..6514624 (-) | 321 | WP_017810888.1 | MazG-like family protein | - |
| CSPA_RS28305 (Cspa_c58220) | rpsR | 6514802..6515062 (-) | 261 | WP_015395847.1 | 30S ribosomal protein S18 | - |
| CSPA_RS28310 (Cspa_c58230) | ssbA | 6515086..6515532 (-) | 447 | WP_015395848.1 | single-stranded DNA-binding protein | Machinery gene |
| CSPA_RS28315 (Cspa_c58240) | rpsF | 6515547..6515834 (-) | 288 | WP_015395849.1 | 30S ribosomal protein S6 | - |
| CSPA_RS28320 (Cspa_c58250) | - | 6515936..6516130 (-) | 195 | WP_015395850.1 | DUF951 domain-containing protein | - |
| CSPA_RS28325 (Cspa_c58260) | - | 6516169..6517035 (-) | 867 | WP_015395851.1 | mechanosensitive ion channel family protein | - |
| CSPA_RS28330 (Cspa_c58270) | - | 6517051..6517293 (-) | 243 | WP_015395852.1 | DUF3343 domain-containing protein | - |
| CSPA_RS28335 (Cspa_c58280) | - | 6517616..6518263 (+) | 648 | WP_015395853.1 | LysE family transporter | - |
| CSPA_RS28340 (Cspa_c58290) | - | 6518273..6519427 (+) | 1155 | WP_015395854.1 | aminotransferase class V-fold PLP-dependent enzyme | - |
| CSPA_RS28345 (Cspa_c58300) | yyaC | 6519527..6520075 (+) | 549 | WP_015395855.1 | spore protease YyaC | - |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 15861.64 Da Isoelectric Point: 4.7079
>NTDB_id=56204 CSPA_RS28310 WP_015395848.1 6515086..6515532(-) (ssbA) [Clostridium saccharoperbutylacetonicum N1-4(HMT)]
MNKVVLIGRLTKDPELRFTPGSGAAVTTLTLAVDKYNTKTGQKEADFVPVVVWGKQAESTANYMSKGSQMAISGRIQTRS
YDAKDGTKRYVTEVVATEVQFLSKGNASGNAGASFGNSNEYSMPVNDAFSGGNFEEDITPVDDGDMPF
MNKVVLIGRLTKDPELRFTPGSGAAVTTLTLAVDKYNTKTGQKEADFVPVVVWGKQAESTANYMSKGSQMAISGRIQTRS
YDAKDGTKRYVTEVVATEVQFLSKGNASGNAGASFGNSNEYSMPVNDAFSGGNFEEDITPVDDGDMPF
Nucleotide
Download Length: 447 bp
>NTDB_id=56204 CSPA_RS28310 WP_015395848.1 6515086..6515532(-) (ssbA) [Clostridium saccharoperbutylacetonicum N1-4(HMT)]
ATGAATAAAGTAGTTCTAATTGGAAGATTAACAAAAGATCCAGAACTAAGATTTACTCCAGGAAGTGGAGCAGCAGTAAC
AACCTTAACATTAGCAGTTGATAAATATAACACAAAGACTGGTCAAAAAGAAGCTGATTTTGTACCTGTAGTAGTATGGG
GCAAACAAGCAGAAAGTACTGCTAATTACATGAGTAAAGGTAGCCAAATGGCTATTAGTGGTAGGATTCAAACCAGAAGT
TATGATGCGAAAGATGGTACTAAAAGATATGTAACAGAAGTAGTTGCTACAGAAGTTCAATTTTTAAGTAAAGGAAATGC
ATCAGGTAATGCTGGAGCTAGTTTTGGTAACAGCAATGAATATTCAATGCCAGTAAATGACGCATTTAGTGGCGGAAATT
TTGAAGAGGATATAACTCCTGTAGATGATGGAGATATGCCTTTCTAA
ATGAATAAAGTAGTTCTAATTGGAAGATTAACAAAAGATCCAGAACTAAGATTTACTCCAGGAAGTGGAGCAGCAGTAAC
AACCTTAACATTAGCAGTTGATAAATATAACACAAAGACTGGTCAAAAAGAAGCTGATTTTGTACCTGTAGTAGTATGGG
GCAAACAAGCAGAAAGTACTGCTAATTACATGAGTAAAGGTAGCCAAATGGCTATTAGTGGTAGGATTCAAACCAGAAGT
TATGATGCGAAAGATGGTACTAAAAGATATGTAACAGAAGTAGTTGCTACAGAAGTTCAATTTTTAAGTAAAGGAAATGC
ATCAGGTAATGCTGGAGCTAGTTTTGGTAACAGCAATGAATATTCAATGCCAGTAAATGACGCATTTAGTGGCGGAAATT
TTGAAGAGGATATAACTCCTGTAGATGATGGAGATATGCCTTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
42.442 |
100 |
0.493 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
52.941 |
68.919 |
0.365 |