Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   L6D13_RS06340 Genome accession   NZ_CP091534
Coordinates   1299947..1300684 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 537-20     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1294947..1305684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6D13_RS06310 (L6D13_06310) yfiL 1295105..1295470 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  L6D13_RS06315 (L6D13_06315) aroF 1295680..1296750 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  L6D13_RS06320 (L6D13_06320) tyrA 1296761..1297882 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  L6D13_RS06325 (L6D13_06325) pheA 1297925..1299085 (-) 1161 WP_000200101.1 bifunctional chorismate mutase/prephenate dehydratase -
  L6D13_RS06330 (L6D13_06330) pheL 1299184..1299231 (-) 48 WP_001700969.1 pheA operon leader peptide PheL -
  L6D13_RS06335 (L6D13_06335) raiA 1299335..1299676 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  L6D13_RS06340 (L6D13_06340) comL 1299947..1300684 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  L6D13_RS06345 (L6D13_06345) rluD 1300819..1301799 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  L6D13_RS06350 (L6D13_06350) yfiH 1301796..1302527 (+) 732 WP_000040129.1 purine nucleoside phosphorylase YfiH -
  L6D13_RS06355 (L6D13_06355) clpC 1302657..1305230 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=562002 L6D13_RS06340 WP_000197686.1 1299947..1300684(-) (comL) [Escherichia coli strain 537-20]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=562002 L6D13_RS06340 WP_000197686.1 1299947..1300684(-) (comL) [Escherichia coli strain 537-20]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376