Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   LVJ79_RS06885 Genome accession   NZ_CP091518
Coordinates   1302875..1304596 (-) Length   573 a.a.
NCBI ID   WP_003786453.1    Uniprot ID   F5S6P0
Organism   Kingella kingae strain 4177/66     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1297875..1309596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ79_RS06880 (LVJ79_06880) purM 1301601..1302638 (-) 1038 WP_003786455.1 phosphoribosylformylglycinamidine cyclo-ligase -
  LVJ79_RS06885 (LVJ79_06885) recD 1302875..1304596 (-) 1722 WP_003786453.1 exodeoxyribonuclease V subunit alpha Machinery gene
  LVJ79_RS06890 (LVJ79_06890) - 1304593..1305390 (-) 798 WP_003786450.1 polyamine aminopropyltransferase -
  LVJ79_RS06895 (LVJ79_06895) - 1305529..1306311 (-) 783 WP_003786448.1 NUDIX domain-containing protein -
  LVJ79_RS06900 (LVJ79_06900) - 1306397..1307293 (+) 897 WP_003786446.1 recombination-associated protein RdgC -
  LVJ79_RS06905 (LVJ79_06905) - 1307380..1307772 (+) 393 WP_003786444.1 hypothetical protein -
  LVJ79_RS06910 (LVJ79_06910) dcd 1307782..1308348 (+) 567 WP_003786442.1 dCTP deaminase -
  LVJ79_RS06915 (LVJ79_06915) recR 1308505..1309128 (+) 624 WP_003786438.1 recombination mediator RecR Machinery gene

Sequence

Protein


Download         Length: 573 a.a.        Molecular weight: 62657.99 Da        Isoelectric Point: 6.5466

>NTDB_id=561775 LVJ79_RS06885 WP_003786453.1 1302875..1304596(-) (recD) [Kingella kingae strain 4177/66]
MSPQDIHTETELDLSPAAQAVCELFARIVPDVADSVAPFVQRLFAASANGDTFVYVSHSDVALLQQATPLVGNDDRSPLV
LDGKRLFLAKSWHLERELAAQIQRLSQQECRLPAPDIITLKLQTWFADAGSHDQQAACTLALIKPFVLISGGPGTGKTTT
VAKLLALLCDEAALPRIALVAPTGKAAARLSQALRGALSRMTDLSPAIAAHLNALDGQTAHRLLGIKPPTLNAEYDSNNP
LVLDMVLIDEASMLDNYLFYQLLCALSDTCRVVLLGDADQLPSVGAGAILTALSTQSQVQAATLAQLQRYLPARSDWRTV
AEQFARLTLSHRFDGQSGIGQFAAAVRTGSLHHRDDVAQLFTQFPQALSQQHGSAKQLAEQMWQQHHDYWQAIDAGDVQA
AFAWQNRLIALTALRFDAQQINQAYRQIAQQHQRVSSSDTWFAGQMLLITRNAPAQKLYNGDVGIVMQPAQSKGLVACFP
DENVGYRTVPLSRLPEHESAFAMTVHKSQGSEYDSVWYFAPSYSTASRALLYTAVTRAKQQFVYWGDLDSAVQASQHHVP
RQTGLANFLQADR

Nucleotide


Download         Length: 1722 bp        

>NTDB_id=561775 LVJ79_RS06885 WP_003786453.1 1302875..1304596(-) (recD) [Kingella kingae strain 4177/66]
ATGAGTCCGCAAGATATCCACACCGAAACCGAATTAGACCTGTCGCCAGCCGCGCAAGCCGTGTGTGAACTGTTTGCACG
CATTGTGCCCGATGTTGCCGACAGCGTTGCGCCGTTTGTGCAACGATTGTTTGCCGCCAGCGCAAATGGCGATACGTTTG
TTTACGTTAGCCACAGCGATGTCGCTCTATTGCAGCAAGCCACGCCATTGGTGGGCAATGATGACCGCAGTCCGCTGGTG
TTGGACGGCAAACGCTTGTTTTTGGCAAAATCGTGGCATTTGGAACGCGAACTTGCCGCGCAAATCCAACGCCTATCGCA
ACAAGAATGCAGGCTGCCTGCGCCCGACATCATCACGCTCAAATTGCAAACGTGGTTTGCCGATGCAGGCAGCCACGACC
AGCAAGCAGCCTGCACTTTGGCGTTGATTAAACCATTTGTGTTGATTAGCGGTGGGCCGGGCACAGGCAAAACCACCACC
GTTGCCAAATTGCTGGCTTTGCTGTGCGATGAAGCCGCCTTACCGCGCATTGCATTGGTTGCGCCCACAGGCAAAGCCGC
AGCACGTTTATCACAAGCCCTGCGTGGCGCATTGTCGCGCATGACCGATTTATCGCCAGCCATTGCCGCGCATTTGAATG
CTTTGGACGGACAAACCGCACACCGTTTATTGGGGATTAAACCGCCCACGCTGAACGCAGAATACGACAGCAACAACCCA
CTTGTGTTGGATATGGTGTTGATTGACGAAGCGTCTATGTTGGATAACTATTTGTTTTATCAGTTGCTTTGTGCTTTGTC
CGATACTTGCCGCGTGGTGTTGCTGGGCGATGCCGACCAACTGCCATCGGTGGGTGCAGGTGCGATTTTGACCGCGCTGT
CCACGCAATCACAAGTGCAGGCTGCTACGTTGGCGCAACTGCAACGCTACTTGCCCGCACGCAGCGATTGGCGCACCGTT
GCCGAACAATTCGCGCGTTTAACATTAAGCCATCGTTTTGATGGCCAAAGCGGCATTGGACAATTTGCCGCCGCCGTTCG
CACAGGCAGCCTGCACCATCGTGATGACGTAGCGCAACTGTTTACCCAGTTTCCGCAAGCCTTGTCGCAGCAACACGGTT
CAGCTAAACAACTTGCCGAGCAAATGTGGCAACAACATCACGACTATTGGCAAGCGATAGACGCTGGCGATGTGCAGGCT
GCTTTTGCGTGGCAAAACCGCTTAATCGCGCTAACGGCGTTGCGTTTTGACGCGCAACAAATCAACCAAGCTTATCGCCA
AATCGCGCAACAACATCAGCGCGTATCCAGTAGCGACACTTGGTTTGCAGGACAAATGTTGTTGATTACACGCAACGCGC
CTGCCCAAAAACTGTATAACGGTGATGTCGGTATTGTCATGCAGCCTGCACAATCCAAAGGCTTGGTTGCATGTTTTCCC
GATGAAAACGTAGGCTACCGCACCGTGCCATTGAGCCGTTTGCCCGAACACGAATCCGCCTTTGCGATGACGGTTCACAA
AAGTCAAGGCTCGGAATACGACAGCGTGTGGTATTTTGCGCCGAGTTACAGCACCGCCAGTCGCGCCTTGCTCTACACCG
CCGTAACCCGAGCCAAACAACAATTTGTGTATTGGGGCGATTTAGATAGCGCGGTTCAAGCCAGCCAACACCATGTGCCA
CGCCAAACAGGATTGGCGAATTTTTTGCAGGCAGATAGGTAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(500-541)

AAA domain (AAA_30)

(131-325)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F5S6P0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae MS11

41.23

96.51

0.398
  recD Neisseria gonorrhoeae strain FA1090

41.049

96.51

0.396