Detailed information NTG0561587

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: L3475_RS10810
• Genome accession: NZ_CP091451
• Coordinates: 2087457..2088554 (+)
• Length: 365 a.a.
• NCBI ID: WP_000266662.1
• Uniprot ID: Q8DMX3
• Organism: Streptococcus pneumoniae strain 3238/09
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2082457..2093554

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L3475_RS10785 (L3475_10705)	pgsA	2082978..2083523 (-)	546	WP_000712136.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
L3475_RS10790 (L3475_10710)	rodZ	2083534..2084355 (-)	822	WP_001227958.1	cytoskeleton protein RodZ	-
L3475_RS10795 (L3475_10715)	yfmH	2084397..2085680 (-)	1284	WP_000170193.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
L3475_RS10800 (L3475_10720)	yfmF	2085677..2086927 (-)	1251	WP_000424257.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
L3475_RS10805 (L3475_10725)	yaaA	2087086..2087454 (+)	369	WP_000455903.1	S4 domain-containing protein YaaA	-
L3475_RS10810 (L3475_10730)	recF	2087457..2088554 (+)	1098	WP_000266662.1	DNA replication/repair protein RecF	Machinery gene
L3475_RS10815 (L3475_10735)	guaB	2088605..2090083 (-)	1479	WP_000073428.1	IMP dehydrogenase	-
L3475_RS10820 (L3475_10740)	trpS	2090235..2091260 (-)	1026	WP_000165444.1	tryptophan--tRNA ligase	-
L3475_RS10825 (L3475_10745)	-	2091466..2093088 (+)	1623	WP_000958770.1	ATP-binding cassette domain-containing protein	-

Sequence

Protein

• Length: 365 a.a.
• Molecular weight: 41916.00 Da
• Isoelectric Point: 9.0596

>NTDB_id=561587 L3475_RS10810 WP_000266662.1 2087457..2088554(+) (recF) [Streptococcus pneumoniae strain 3238/09]
MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIHFDEEQLHLSGLVQKKTGS
IPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQR
NTYLKSAQKIDETFLSVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNITDKQNLSESFKI
ALEKSRSRDLFKKNTGVGPHRDDISFYINGMDASFGSQGQHRSLVLSIKLAEIELMESITTESPILLLDDVMSELDNTRQ
LKLLETISQSIQTFITTTSLDHLQNLPENLSIFTIQDGKASVNGN

Nucleotide

• Length: 1098 bp

>NTDB_id=561587 L3475_RS10810 WP_000266662.1 2087457..2088554(+) (recF) [Streptococcus pneumoniae strain 3238/09]
ATGTGGCTACAACATCTATCTCTCAAGACTTTTCGTAATTACAAAGAAACGAAAATAGACTTTAATCCTAAATTGAATGT
CTTTTTGGGACGTAATGCACAAGGAAAAACAAACATGTTAGAGGCTATCTATTTTTTAGCCTTAACGCGTAGTCATCGAA
CTCGAACAGATAAAAATCTCATTCATTTTGATGAGGAACAACTTCATCTTTCAGGTCTCGTTCAGAAAAAAACTGGATCC
ATTCCCCTAGAAATCGAACTAACACAAAAAGGCCGTGTAACAAAAGTTAATCACTTAAAACAGGCACGCCTTTCAGATTA
TGTAGGACACATGAATGTTGTCTTATTTGCTCCTGAAGATTTACAACTAATTAAAGGAGCACCTTCGATTCGACGAAAAT
TCATTGATATGGAACTTGGGCAAATTAAGCCAATCTATTTATCTGACTTAACCAATTATAACCACATCCTAAAGCAAAGA
AACACTTACCTAAAATCAGCTCAAAAAATAGATGAAACATTCCTTTCTGTGTTAGATGATCAGCTAGTTGATTATGGATG
TCGTGTAATGAATCACCGCTTAGATTTCATAAAAAAACTAGAATCATTTGGGCGTAAGAAACATTTTGAACTCTCTAATC
AGATCGAAGAGTTGTCAATATCCTATCAATCTTCTGTCAATATAACTGACAAACAAAACTTATCCGAATCTTTCAAAATT
GCTTTAGAAAAAAGTAGATCCAGAGATTTATTTAAAAAGAATACTGGTGTCGGTCCTCATCGAGATGACATTTCTTTTTA
TATAAATGGGATGGATGCTAGTTTCGGAAGCCAAGGTCAACATCGTAGTCTCGTCCTCTCGATAAAATTAGCAGAAATCG
AATTAATGGAAAGCATTACCACAGAATCTCCTATATTACTGCTTGACGATGTGATGAGTGAACTTGACAACACTAGACAG
TTAAAATTATTAGAAACGATTTCTCAATCAATCCAAACCTTTATCACAACAACAAGCTTAGACCATCTTCAAAATCTGCC
AGAAAATCTAAGTATCTTCACTATTCAGGATGGTAAAGCTTCTGTAAATGGAAATTGA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

3D structure

• AlphaFold DB: Q8DMX3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	100	100	1
recF	Bacillus subtilis subsp. subtilis str. 168	45.902	100	0.46