Detailed information NTG0561472

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: L3474_RS10480
• Genome accession: NZ_CP091450
• Coordinates: 2053554..2054651 (+)
• Length: 365 a.a.
• NCBI ID: WP_000266662.1
• Uniprot ID: Q8DMX3
• Organism: Streptococcus pneumoniae strain 3641/15
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2048554..2059651

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L3474_RS10455 (L3474_10385)	pgsA	2049075..2049620 (-)	546	WP_000712136.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
L3474_RS10460 (L3474_10390)	rodZ	2049631..2050452 (-)	822	WP_001227958.1	cytoskeleton protein RodZ	-
L3474_RS10465 (L3474_10395)	yfmH	2050494..2051777 (-)	1284	WP_000170193.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
L3474_RS10470 (L3474_10400)	yfmF	2051774..2053024 (-)	1251	WP_000424257.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
L3474_RS10475 (L3474_10405)	yaaA	2053183..2053551 (+)	369	WP_000455903.1	S4 domain-containing protein YaaA	-
L3474_RS10480 (L3474_10410)	recF	2053554..2054651 (+)	1098	WP_000266662.1	DNA replication/repair protein RecF	Machinery gene
L3474_RS10485 (L3474_10415)	guaB	2054702..2056180 (-)	1479	WP_000073428.1	IMP dehydrogenase	-
L3474_RS10490 (L3474_10420)	trpS	2056332..2057357 (-)	1026	WP_000165444.1	tryptophan--tRNA ligase	-
L3474_RS10495 (L3474_10425)	-	2057563..2059185 (+)	1623	WP_000958770.1	ATP-binding cassette domain-containing protein	-

Sequence

Protein

• Length: 365 a.a.
• Molecular weight: 41916.00 Da
• Isoelectric Point: 9.0596

>NTDB_id=561472 L3474_RS10480 WP_000266662.1 2053554..2054651(+) (recF) [Streptococcus pneumoniae strain 3641/15]
MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIHFDEEQLHLSGLVQKKTGS
IPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQR
NTYLKSAQKIDETFLSVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNITDKQNLSESFKI
ALEKSRSRDLFKKNTGVGPHRDDISFYINGMDASFGSQGQHRSLVLSIKLAEIELMESITTESPILLLDDVMSELDNTRQ
LKLLETISQSIQTFITTTSLDHLQNLPENLSIFTIQDGKASVNGN

Nucleotide

• Length: 1098 bp

>NTDB_id=561472 L3474_RS10480 WP_000266662.1 2053554..2054651(+) (recF) [Streptococcus pneumoniae strain 3641/15]
ATGTGGCTACAACATCTATCTCTCAAGACTTTTCGTAATTACAAAGAAACGAAAATAGACTTTAATCCTAAATTGAATGT
CTTTTTGGGACGTAATGCACAAGGAAAAACAAACATGTTAGAGGCTATCTATTTTTTAGCCTTAACGCGTAGTCATCGAA
CTCGAACAGATAAAAATCTCATTCATTTTGATGAGGAACAACTTCATCTTTCAGGTCTCGTTCAGAAAAAAACTGGATCC
ATTCCCCTAGAAATCGAACTAACACAAAAAGGCCGTGTAACAAAAGTTAATCACTTAAAACAGGCACGCCTTTCAGATTA
TGTAGGACACATGAATGTTGTCTTATTTGCTCCTGAAGATTTACAACTAATTAAAGGAGCACCTTCGATTCGACGAAAAT
TCATTGATATGGAACTTGGGCAAATTAAGCCAATCTATTTATCTGACTTAACCAATTATAACCACATCCTAAAGCAAAGA
AACACTTACCTAAAATCAGCTCAAAAAATAGATGAAACATTCCTTTCTGTGTTAGATGATCAGCTAGTTGATTATGGATG
TCGTGTAATGAATCACCGCTTAGATTTCATAAAAAAACTAGAATCATTTGGGCGTAAGAAACATTTTGAACTCTCTAATC
AGATCGAAGAGTTGTCAATATCCTATCAATCTTCTGTCAATATAACTGACAAACAAAACTTATCCGAATCTTTCAAAATT
GCTTTAGAAAAAAGTAGATCCAGAGATTTATTTAAAAAGAATACTGGTGTCGGTCCTCATCGAGATGACATTTCTTTTTA
TATAAATGGGATGGATGCTAGTTTCGGAAGCCAAGGTCAACATCGTAGTCTCGTCCTCTCGATAAAATTAGCAGAAATCG
AATTAATGGAAAGCATTACCACAGAATCTCCTATATTACTGCTTGACGATGTGATGAGTGAACTTGACAACACTAGACAG
TTAAAATTATTAGAAACGATTTCTCAATCAATCCAAACCTTTATCACAACAACAAGCTTAGACCATCTTCAAAATCTGCC
AGAAAATCTAAGTATCTTCACTATTCAGGATGGTAAAGCTTCTGTAAATGGAAATTGA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

3D structure

• AlphaFold DB: Q8DMX3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	100	100	1
recF	Bacillus subtilis subsp. subtilis str. 168	45.902	100	0.46