Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   KSO_RS17385 Genome accession   NC_020272
Coordinates   3597081..3597479 (+) Length   132 a.a.
NCBI ID   WP_003156589.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens IT-45     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3592081..3602479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSO_RS17365 (KSO_017850) - 3594480..3594842 (-) 363 WP_003156585.1 winged helix-turn-helix transcriptional regulator -
  KSO_RS17370 (KSO_017855) hxlA 3595074..3595709 (+) 636 WP_014304319.1 3-hexulose-6-phosphate synthase -
  KSO_RS17375 (KSO_017860) hxlB 3595706..3596263 (+) 558 WP_014304318.1 6-phospho-3-hexuloisomerase -
  KSO_RS17380 (KSO_017865) nucA/comI 3596622..3597059 (+) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  KSO_RS17385 (KSO_017870) nin/comJ 3597081..3597479 (+) 399 WP_003156589.1 competence protein ComJ Regulator
  KSO_RS17390 (KSO_017875) - 3597520..3597738 (-) 219 Protein_3503 family 1 glycosylhydrolase -
  KSO_RS20730 - 3597737..3598015 (-) 279 WP_107890409.1 family 1 glycosylhydrolase -
  KSO_RS17395 (KSO_017885) - 3597957..3598232 (-) 276 WP_369719109.1 YckD family protein -
  KSO_RS17400 (KSO_017890) - 3598349..3598783 (-) 435 WP_003156592.1 RDD family protein -
  KSO_RS17405 (KSO_017895) - 3598798..3599934 (-) 1137 WP_003156594.1 zinc-dependent alcohol dehydrogenase -
  KSO_RS17410 (KSO_017900) - 3599999..3601201 (-) 1203 WP_015388720.1 GTP-binding protein -
  KSO_RS20520 - 3601354..3601479 (+) 126 Protein_3509 hypothetical protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 15077.06 Da        Isoelectric Point: 4.6564

>NTDB_id=56137 KSO_RS17385 WP_003156589.1 3597081..3597479(+) (nin/comJ) [Bacillus amyloliquefaciens IT-45]
MNKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVFRLNTSEPVLSYEKKATVPF
EVVKDGIEIESVMSKRLFFNIPKGRYSLTCYSVPAEISDLHADTYIIDADAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=56137 KSO_RS17385 WP_003156589.1 3597081..3597479(+) (nin/comJ) [Bacillus amyloliquefaciens IT-45]
TTGAATAAATCATGGAAACCGCAAGAACTGGCCATTTCGTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTCGAAGCAAGGAGAA
ATACGAGGGCATTTATCGTCTTCAGGCTTAACACAAGTGAACCGGTACTATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGTTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCAAAGCGGCTTTTCTTTAATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTGATGCAGACGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

78.295

97.727

0.765

Multiple sequence alignment