Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   L3Z43_RS16120 Genome accession   NZ_CP091427
Coordinates   3382003..3382740 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 1000C-3     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3377003..3387740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3Z43_RS16105 clpC 3377457..3380030 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  L3Z43_RS16110 yfiH 3380160..3380891 (-) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  L3Z43_RS16115 rluD 3380888..3381868 (-) 981 WP_000079099.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  L3Z43_RS16120 comL 3382003..3382740 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  L3Z43_RS16125 raiA 3383011..3383352 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  L3Z43_RS16130 pheL 3383456..3383503 (+) 48 WP_010723158.1 phe operon leader peptide -
  L3Z43_RS16135 pheA 3383602..3384762 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  L3Z43_RS16140 tyrA 3384805..3385926 (-) 1122 WP_000225229.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  L3Z43_RS16145 aroF 3385937..3387007 (-) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  L3Z43_RS16150 yfiL 3387217..3387582 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=561327 L3Z43_RS16120 WP_000197686.1 3382003..3382740(+) (comL) [Escherichia coli strain 1000C-3]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=561327 L3Z43_RS16120 WP_000197686.1 3382003..3382740(+) (comL) [Escherichia coli strain 1000C-3]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376