Detailed information NTG0561278

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: L3X15_RS10465
• Genome accession: NZ_CP091423
• Coordinates: 2142461..2143555 (+)
• Length: 364 a.a.
• NCBI ID: WP_012028050.1
• Uniprot ID: A0A0H3N2H6
• Organism: Streptococcus suis strain LSM29
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2137461..2148555

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L3X15_RS10440 (L3X15_10440)	pgsA	2137980..2138519 (-)	540	WP_012028045.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
L3X15_RS10445 (L3X15_10445)	rodZ	2138529..2139386 (-)	858	WP_012028600.1	cytoskeleton protein RodZ	-
L3X15_RS10450 (L3X15_10450)	yfmH	2139468..2140751 (-)	1284	WP_012775413.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
L3X15_RS10455 (L3X15_10455)	yfmF	2140748..2142001 (-)	1254	WP_012028048.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
L3X15_RS10460 (L3X15_10460)	yaaA	2142075..2142458 (+)	384	WP_012028049.1	S4 domain-containing protein YaaA	-
L3X15_RS10465 (L3X15_10465)	recF	2142461..2143555 (+)	1095	WP_012028050.1	DNA replication/repair protein RecF	Machinery gene
L3X15_RS10470 (L3X15_10470)	guaB	2143827..2145308 (-)	1482	WP_012028051.1	IMP dehydrogenase	-
L3X15_RS10475 (L3X15_10475)	trpS	2145540..2146565 (-)	1026	WP_012775414.1	tryptophan--tRNA ligase	-
L3X15_RS10480 (L3X15_10480)	-	2146920..2147792 (+)	873	WP_012775460.1	YitT family protein	-

Sequence

Protein

• Length: 364 a.a.
• Molecular weight: 42188.24 Da
• Isoelectric Point: 6.9173

>NTDB_id=561278 L3X15_RS10465 WP_012028050.1 2142461..2143555(+) (recF) [Streptococcus suis strain LSM29]
MWLERLELQHFRNYNQLDIEFHKGLNVFLGENAQGKTNILESIYVLALTRSHRTRTDKDLLQFQEKELSISGLLHRTSGK
VPLDIHLTDKGRVTKVNHLKQAKLSNYIGHMNVVLFAPEDLQLIKGAPALRRKFIDVELGQIKPLYLSDLSNYNHVLKQR
NTYLKSTDKIDENFLSVLDQQLAEYGSRVIQHRIDFLKKLEEFGNRKVQEISGNREELTIEYQTSIELTDDVNLIDKFLT
ELEKSRKRDLFKKNTGVGPHRDDVAFFINGMNAHYASQGQHRSLVLSLKLAEIELMKEVTREYPILLLDDVMSELDNNRQ
IKLLETITDTIQTFITTTSLDHLHKLPDSLKIFHIESGKVTESE

Nucleotide

• Length: 1095 bp

>NTDB_id=561278 L3X15_RS10465 WP_012028050.1 2142461..2143555(+) (recF) [Streptococcus suis strain LSM29]
ATGTGGCTAGAACGATTAGAGTTACAACATTTTCGCAATTACAACCAATTAGATATTGAGTTCCACAAAGGGCTCAATGT
CTTTTTAGGCGAAAACGCCCAAGGAAAAACCAATATTCTAGAATCTATCTATGTTTTAGCCTTAACACGAAGTCATCGAA
CACGGACAGATAAGGACCTACTACAGTTTCAAGAAAAGGAATTATCTATTTCTGGTTTACTCCATCGCACAAGCGGTAAA
GTTCCCCTTGACATTCACTTGACAGACAAGGGACGAGTGACCAAGGTCAACCATCTCAAACAAGCCAAGCTTTCCAACTA
TATCGGCCACATGAATGTTGTTCTCTTCGCCCCTGAAGATTTACAGCTGATAAAAGGTGCGCCTGCTTTGAGAAGAAAGT
TCATCGATGTCGAGCTCGGGCAAATCAAGCCACTCTATCTCTCTGACCTATCGAATTATAACCACGTTTTAAAACAAAGA
AATACTTACCTCAAATCTACAGATAAGATTGATGAGAACTTCCTATCTGTGTTAGATCAGCAACTTGCTGAATATGGTAG
TCGTGTTATCCAACATCGTATTGACTTTCTAAAGAAATTAGAGGAATTCGGAAATAGAAAAGTTCAAGAAATATCTGGCA
ATCGGGAAGAATTGACAATCGAATACCAGACCTCAATCGAATTGACAGATGATGTCAATTTAATTGACAAATTCTTGACG
GAACTAGAAAAGTCTCGTAAACGTGATTTATTTAAGAAAAATACAGGAGTTGGACCACATCGAGATGATGTAGCTTTCTT
TATAAATGGAATGAATGCCCATTATGCTAGCCAAGGTCAGCACCGCAGTCTCGTTCTGTCACTCAAACTAGCTGAAATTG
AGCTGATGAAAGAAGTCACACGAGAGTACCCAATTCTACTCTTAGATGATGTTATGAGTGAGCTGGATAATAATCGTCAA
ATCAAACTATTAGAAACTATTACAGATACGATTCAAACATTTATTACAACGACATCTTTAGACCATTTACATAAGCTACC
TGATAGTTTAAAAATCTTCCATATTGAGTCTGGTAAGGTTACTGAGTCAGAATAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

3D structure

• AlphaFold DB: A0A0H3N2H6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	70.36	99.176	0.698
recF	Bacillus subtilis subsp. subtilis str. 168	43.514	100	0.442