Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   KSO_RS07880 Genome accession   NC_020272
Coordinates   1529112..1529912 (+) Length   266 a.a.
NCBI ID   WP_003153177.1    Uniprot ID   I2C7K5
Organism   Bacillus amyloliquefaciens IT-45     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 1524112..1534912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSO_RS07860 (KSO_008085) - 1524234..1525079 (+) 846 WP_015388017.1 TlyA family RNA methyltransferase -
  KSO_RS07865 (KSO_008090) ahrC 1525176..1525625 (+) 450 WP_003153173.1 transcriptional regulator AhrC/ArgR -
  KSO_RS07870 (KSO_008095) recN 1525657..1527387 (+) 1731 WP_003153174.1 DNA repair protein RecN Machinery gene
  KSO_RS07875 (KSO_008100) spoIVB 1527551..1528831 (+) 1281 WP_007408360.1 SpoIVB peptidase -
  KSO_RS07880 (KSO_008105) spo0A 1529112..1529912 (+) 801 WP_003153177.1 sporulation transcription factor Spo0A Regulator
  KSO_RS07885 (KSO_008110) alr 1530058..1531239 (-) 1182 WP_015388018.1 alanine racemase -
  KSO_RS07890 (KSO_008115) - 1531414..1531626 (-) 213 WP_014305392.1 spore germination protein -
  KSO_RS07895 (KSO_008120) - 1531752..1531964 (-) 213 WP_003153183.1 spore germination protein -
  KSO_RS07900 (KSO_008125) - 1532090..1533208 (-) 1119 WP_015388019.1 NADH-dependent flavin oxidoreductase -
  KSO_RS20245 (KSO_008130) - 1533302..1533439 (-) 138 WP_014470646.1 hypothetical protein -
  KSO_RS07910 (KSO_008140) - 1533730..1534362 (-) 633 WP_014418348.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29630.11 Da        Isoelectric Point: 6.1630

>NTDB_id=56106 KSO_RS07880 WP_003153177.1 1529112..1529912(+) (spo0A) [Bacillus amyloliquefaciens IT-45]
MEKIKVCVADDNRELVSLLSEYIEGQDDMEVIGVAYNGQECLSLFKDKNPDVLVLDIIMPHLDGLAVLERLRESELEKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNVSSVTHRAPSAQSSIIRSQPEPKRKNLDASITSII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=56106 KSO_RS07880 WP_003153177.1 1529112..1529912(+) (spo0A) [Bacillus amyloliquefaciens IT-45]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTTGTAAGCCTGTTGAGTGAATATATAGAGGGACAGGA
TGATATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGTCTTTCTTTGTTTAAAGATAAGAATCCCGATGTGCTCG
TGTTAGACATTATCATGCCGCATCTGGACGGACTTGCGGTTTTGGAGCGTCTGCGTGAATCAGAGCTCGAGAAGCAGCCG
AACGTCATCATGCTGACGGCATTCGGTCAGGAAGACGTTACGAAAAAAGCCGTCGATTTAGGCGCATCCTATTTCATCCT
GAAGCCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTAAGCGGAAATGTCAGCAGTGTCACACACCGTGCCC
CGTCTGCGCAAAGCAGCATTATCCGCAGCCAGCCGGAGCCGAAGCGGAAAAATCTCGATGCCAGCATTACAAGCATTATC
CATGAGATCGGTGTGCCTGCCCATATCAAAGGCTATCTTTATTTGCGTGAAGCCATTTCCATGGTGTATAACGATATTGA
ACTCCTCGGCAGCATCACAAAAGTCCTTTATCCCGACATCGCCAAAAAATTCAACACGACCGCAAGCCGTGTAGAACGGG
CCATCCGCCACGCCATTGAAGTCGCATGGAGCAGGGGAAATATTGATTCCATTTCTTCACTGTTCGGATATACGGTAAGC
ATGACAAAAGCAAAACCAACCAACTCAGAGTTCATCGCGATGGTTGCTGACAAGCTGAGATTGGAGCATAAAGCTTCGTA
A

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C7K5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

96.629

100

0.97

Multiple sequence alignment