Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   KFV12_RS13185 Genome accession   NZ_CP073819
Coordinates   2468734..2469264 (-) Length   176 a.a.
NCBI ID   WP_099581623.1    Uniprot ID   A0A2G5NHY9
Organism   Macrococcus epidermidis strain Epi3002-OL     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2445398..2470026 2468734..2469264 within 0


Gene organization within MGE regions


Location: 2445398..2470026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFV12_RS13045 (KFV12_13085) - 2445398..2446126 (+) 729 WP_254256931.1 serine hydrolase -
  KFV12_RS13050 (KFV12_13090) - 2446105..2447013 (-) 909 WP_111716997.1 C40 family peptidase -
  KFV12_RS13055 (KFV12_13095) - 2446997..2448094 (-) 1098 WP_254256932.1 dipeptide epimerase -
  KFV12_RS13065 (KFV12_13105) - 2448377..2448745 (-) 369 WP_111716993.1 nuclear transport factor 2 family protein -
  KFV12_RS13070 (KFV12_13110) spn 2449253..2449561 (+) 309 WP_111716991.1 SPIN family peroxidase inhibitor -
  KFV12_RS13075 (KFV12_13115) - 2449756..2450802 (-) 1047 WP_254256933.1 hypothetical protein -
  KFV12_RS13080 (KFV12_13120) - 2450792..2451235 (-) 444 WP_254256934.1 Panacea domain-containing protein -
  KFV12_RS13085 (KFV12_13125) - 2451627..2451998 (-) 372 WP_254256935.1 hypothetical protein -
  KFV12_RS13090 (KFV12_13130) - 2451985..2452473 (-) 489 WP_254256936.1 hypothetical protein -
  KFV12_RS13095 (KFV12_13135) - 2452569..2453267 (-) 699 WP_254256937.1 hypothetical protein -
  KFV12_RS13100 (KFV12_13140) - 2453270..2453827 (-) 558 WP_254256938.1 terminase small subunit -
  KFV12_RS13105 (KFV12_13145) - 2454149..2456455 (-) 2307 WP_254256939.1 VapE domain-containing protein -
  KFV12_RS13110 (KFV12_13150) - 2456481..2456762 (-) 282 WP_254256940.1 hypothetical protein -
  KFV12_RS13115 (KFV12_13155) - 2456834..2457130 (-) 297 WP_254256941.1 hypothetical protein -
  KFV12_RS13120 (KFV12_13160) - 2457143..2457418 (-) 276 WP_254256942.1 hypothetical protein -
  KFV12_RS13125 (KFV12_13165) - 2457419..2457580 (-) 162 WP_254256943.1 hypothetical protein -
  KFV12_RS13130 (KFV12_13170) - 2457596..2457814 (-) 219 WP_254256944.1 BetR domain protein -
  KFV12_RS13135 (KFV12_13175) - 2458003..2458380 (+) 378 WP_254256945.1 helix-turn-helix domain-containing protein -
  KFV12_RS13140 (KFV12_13180) - 2458384..2459619 (+) 1236 WP_254256946.1 site-specific integrase -
  KFV12_RS13145 (KFV12_13185) guaA 2460327..2461868 (-) 1542 WP_254256947.1 glutamine-hydrolyzing GMP synthase -
  KFV12_RS13150 (KFV12_13190) guaB 2461931..2463400 (-) 1470 WP_239242230.1 IMP dehydrogenase -
  KFV12_RS13155 (KFV12_13195) - 2463446..2464714 (-) 1269 WP_254256948.1 nucleobase:cation symporter-2 family protein -
  KFV12_RS13160 (KFV12_13200) xpt 2464716..2465291 (-) 576 WP_111716985.1 xanthine phosphoribosyltransferase -
  KFV12_RS13165 (KFV12_13205) - 2465861..2466880 (+) 1020 WP_111716983.1 YsnF/AvaK domain-containing protein -
  KFV12_RS13170 (KFV12_13210) - 2467009..2467617 (+) 609 WP_111716981.1 GNAT family N-acetyltransferase -
  KFV12_RS13175 (KFV12_13215) - 2467679..2468227 (-) 549 WP_254256949.1 YfbU family protein -
  KFV12_RS13180 (KFV12_13220) rpsR 2468458..2468700 (-) 243 WP_096077771.1 30S ribosomal protein S18 -
  KFV12_RS13185 (KFV12_13225) ssbA 2468734..2469264 (-) 531 WP_099581623.1 single-stranded DNA-binding protein Machinery gene
  KFV12_RS13190 (KFV12_13230) rpsF 2469289..2469579 (-) 291 WP_096077769.1 30S ribosomal protein S6 -
  KFV12_RS13195 (KFV12_13235) - 2469703..2470026 (-) 324 WP_111716977.1 hypothetical protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19620.18 Da        Isoelectric Point: 4.5566

>NTDB_id=560980 KFV12_RS13185 WP_099581623.1 2468734..2469264(-) (ssbA) [Macrococcus epidermidis strain Epi3002-OL]
MLNRVVLVGRLTKDPEYRVTPSGVSVATFTLAVNRTFTNAQGERQADFINCVVFRKQAENVNNFLNKGSLAGVDGRLQSR
SYDNQEGRRVYVTEVICDSVQFLEPKNANQNRSNNDPSQDYSSYDQGDYGQQSQGQNYQSNYNNNNQQQSNTSAPSTNPF
ANATGPIDISDDDLPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=560980 KFV12_RS13185 WP_099581623.1 2468734..2469264(-) (ssbA) [Macrococcus epidermidis strain Epi3002-OL]
TTGCTTAACCGAGTTGTATTAGTAGGTCGTTTAACAAAAGATCCAGAATACAGAGTCACACCATCAGGCGTGTCAGTAGC
TACATTTACATTAGCAGTTAATCGCACATTTACAAATGCGCAAGGAGAGAGACAAGCTGATTTTATCAATTGTGTCGTTT
TCCGTAAACAAGCAGAAAATGTGAATAACTTCTTAAACAAAGGTAGTTTAGCTGGGGTAGATGGCAGATTGCAATCACGT
AGTTATGATAATCAAGAAGGCCGTAGAGTATATGTAACGGAAGTAATTTGTGATTCAGTACAGTTCTTAGAACCGAAGAA
TGCAAATCAAAACCGTTCAAATAATGATCCGAGTCAAGACTATTCAAGTTATGATCAAGGTGATTATGGACAACAATCTC
AAGGTCAAAATTATCAATCAAATTATAATAACAACAATCAACAACAGTCTAATACATCAGCACCATCAACGAATCCATTT
GCAAATGCAACTGGACCGATTGATATTAGTGATGATGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G5NHY9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

60

100

0.614
  ssb Latilactobacillus sakei subsp. sakei 23K

52.941

100

0.562