Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   KFV11_RS06540 Genome accession   NZ_CP073809
Coordinates   1267370..1267705 (-) Length   111 a.a.
NCBI ID   WP_149458576.1    Uniprot ID   -
Organism   Macrococcus equipercicus strain Epi0143-OL     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1262370..1272705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFV11_RS06505 (KFV11_06530) gcvPA 1263071..1264414 (-) 1344 WP_149458581.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  KFV11_RS06510 (KFV11_06535) gcvT 1264426..1265520 (-) 1095 WP_254249522.1 glycine cleavage system aminomethyltransferase GcvT -
  KFV11_RS06515 (KFV11_06540) - 1265655..1266158 (-) 504 WP_254249523.1 shikimate kinase -
  KFV11_RS06520 (KFV11_06545) - 1266160..1266336 (-) 177 WP_170234528.1 hypothetical protein -
  KFV11_RS06525 (KFV11_06550) - 1266314..1266781 (-) 468 WP_149458579.1 ComGF family competence protein -
  KFV11_RS06530 (KFV11_06555) - 1266720..1266962 (-) 243 WP_254249524.1 hypothetical protein -
  KFV11_RS06535 (KFV11_06560) - 1266949..1267395 (-) 447 WP_149458577.1 hypothetical protein -
  KFV11_RS06540 (KFV11_06565) comGC 1267370..1267705 (-) 336 WP_149458576.1 competence type IV pilus major pilin ComGC Machinery gene
  KFV11_RS06545 (KFV11_06570) comGB 1267719..1268753 (-) 1035 WP_254249525.1 competence type IV pilus assembly protein ComGB -
  KFV11_RS06550 (KFV11_06575) comGA 1268737..1269714 (-) 978 WP_149458574.1 competence type IV pilus ATPase ComGA -
  KFV11_RS06555 (KFV11_06580) - 1269914..1270165 (+) 252 WP_149458573.1 DUF2626 domain-containing protein -
  KFV11_RS06560 (KFV11_06585) - 1270196..1270825 (-) 630 WP_149458572.1 MBL fold metallo-hydrolase -
  KFV11_RS06565 (KFV11_06590) - 1270922..1271161 (+) 240 WP_149458571.1 DUF2759 family protein -
  KFV11_RS06570 (KFV11_06595) - 1271187..1271498 (-) 312 WP_254249526.1 MTH1187 family thiamine-binding protein -
  KFV11_RS06575 (KFV11_06600) - 1271508..1272467 (-) 960 WP_149458569.1 ROK family glucokinase -
  KFV11_RS06580 (KFV11_06605) - 1272464..1272655 (-) 192 WP_149458568.1 YqgQ family protein -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12224.33 Da        Isoelectric Point: 9.2315

>NTDB_id=560932 KFV11_RS06540 WP_149458576.1 1267370..1267705(-) (comGC) [Macrococcus equipercicus strain Epi0143-OL]
MLNFIRKGFKKVFRSDEGFTLIEMLLVLLVISVLIIVIIPNIAKQTDNVQQTGCQAQVKMVQGQIEAYRLQNGTTPASIQ
ELVPEFLKSNQTTCKNGSQITIVNGEATAGK

Nucleotide


Download         Length: 336 bp        

>NTDB_id=560932 KFV11_RS06540 WP_149458576.1 1267370..1267705(-) (comGC) [Macrococcus equipercicus strain Epi0143-OL]
ATGCTGAACTTTATCAGGAAAGGTTTTAAAAAAGTTTTCAGAAGTGATGAAGGATTTACTTTGATTGAAATGCTGCTCGT
CCTGCTGGTGATTTCGGTGCTGATCATCGTCATTATACCAAATATCGCCAAACAGACCGATAATGTTCAGCAGACAGGCT
GTCAGGCCCAGGTGAAGATGGTGCAGGGGCAGATTGAGGCTTATAGACTGCAGAACGGGACAACGCCTGCTTCTATTCAG
GAACTGGTACCTGAATTTTTGAAATCCAATCAGACCACATGTAAAAATGGCAGCCAGATTACAATTGTTAATGGCGAAGC
GACAGCCGGCAAGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(15-38)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

60

90.09

0.541
  comGC Staphylococcus aureus N315

60

90.09

0.541
  comGC/cglC Streptococcus mitis SK321

38.739

100

0.387