Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   KFV06_RS06265 Genome accession   NZ_CP073801
Coordinates   1238973..1239296 (-) Length   107 a.a.
NCBI ID   WP_101037082.1    Uniprot ID   -
Organism   Macrococcoides caseolyticum strain 19Msa198     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1233973..1244296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFV06_RS06235 (KFV06_06235) gcvPA 1234683..1236026 (-) 1344 WP_101035255.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  KFV06_RS06240 (KFV06_06240) gcvT 1236039..1237124 (-) 1086 WP_101035320.1 glycine cleavage system aminomethyltransferase GcvT -
  KFV06_RS06245 (KFV06_06245) - 1237262..1237768 (-) 507 WP_101035254.1 shikimate kinase -
  KFV06_RS06250 (KFV06_06250) comGF 1237929..1238381 (-) 453 WP_086038773.1 competence type IV pilus minor pilin ComGF -
  KFV06_RS06255 (KFV06_06255) - 1238326..1238568 (-) 243 WP_157819992.1 hypothetical protein -
  KFV06_RS06260 (KFV06_06260) comGD 1238555..1238980 (-) 426 WP_101037039.1 competence type IV pilus minor pilin ComGD -
  KFV06_RS06265 (KFV06_06265) comGC 1238973..1239296 (-) 324 WP_101037082.1 competence type IV pilus major pilin ComGC Machinery gene
  KFV06_RS06270 (KFV06_06270) comGB 1239318..1240391 (-) 1074 WP_086038845.1 competence type IV pilus assembly protein ComGB -
  KFV06_RS06275 (KFV06_06275) comGA 1240342..1241313 (-) 972 WP_012657092.1 competence type IV pilus ATPase ComGA Machinery gene
  KFV06_RS06280 (KFV06_06280) - 1241525..1241773 (+) 249 WP_041636023.1 DUF2626 domain-containing protein -
  KFV06_RS06285 (KFV06_06285) - 1241800..1242420 (-) 621 WP_086038847.1 MBL fold metallo-hydrolase -
  KFV06_RS06290 (KFV06_06290) - 1242510..1242749 (+) 240 WP_041636024.1 DUF2759 domain-containing protein -
  KFV06_RS06295 (KFV06_06295) - 1242775..1243086 (-) 312 WP_086038848.1 MTH1187 family thiamine-binding protein -
  KFV06_RS06300 (KFV06_06300) - 1243086..1244054 (-) 969 WP_086038849.1 ROK family glucokinase -
  KFV06_RS06305 (KFV06_06305) - 1244051..1244242 (-) 192 WP_041636025.1 YqgQ family protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 11806.90 Da        Isoelectric Point: 8.4918

>NTDB_id=560803 KFV06_RS06265 WP_101037082.1 1238973..1239296(-) (comGC) [Macrococcoides caseolyticum strain 19Msa198]
MARRFKKQFSKDDGFTLIEMLLVLLVISILIIVIIPNIAKQSKTVQAKGCEAQVKMVQGQIEAYRIDTGKTPSTINELVP
EYLKENQVKCKDGADIIINNGEASLGA

Nucleotide


Download         Length: 324 bp        

>NTDB_id=560803 KFV06_RS06265 WP_101037082.1 1238973..1239296(-) (comGC) [Macrococcoides caseolyticum strain 19Msa198]
ATGGCGCGCAGGTTTAAAAAACAGTTTAGTAAGGATGATGGATTTACTTTAATTGAAATGTTATTAGTATTGCTCGTAAT
TTCGATTTTAATCATCGTTATCATTCCGAATATAGCTAAACAATCTAAGACAGTACAGGCTAAAGGATGTGAAGCTCAGG
TAAAGATGGTACAAGGTCAGATTGAGGCATATCGAATTGATACGGGTAAAACACCATCTACAATAAATGAGCTTGTTCCT
GAATATTTAAAAGAAAATCAAGTGAAATGTAAAGATGGAGCAGACATAATAATCAATAATGGTGAGGCATCATTAGGTGC
TTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

57.447

87.85

0.505
  comGC Staphylococcus aureus N315

57.447

87.85

0.505
  comGC Bacillus subtilis subsp. subtilis str. 168

45.652

85.981

0.393