Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   C9J31_RS23360 Genome accession   NZ_CP073713
Coordinates   4806346..4806915 (-) Length   189 a.a.
NCBI ID   WP_054768473.1    Uniprot ID   -
Organism   Lysinibacillus parviboronicapiens strain VT1065     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4801346..4811915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9J31_RS23340 rplI 4802294..4802740 (-) 447 WP_107925967.1 50S ribosomal protein L9 -
  C9J31_RS23345 - 4802737..4804710 (-) 1974 WP_107951473.1 DHH family phosphoesterase -
  C9J31_RS23350 - 4804723..4805664 (-) 942 WP_107951474.1 YybS family protein -
  C9J31_RS23355 rpsR 4806062..4806298 (-) 237 WP_024364646.1 30S ribosomal protein S18 -
  C9J31_RS23360 ssbA 4806346..4806915 (-) 570 WP_054768473.1 single-stranded DNA-binding protein Machinery gene
  C9J31_RS23365 rpsF 4806952..4807242 (-) 291 WP_054768474.1 30S ribosomal protein S6 -
  C9J31_RS23370 - 4807417..4807992 (+) 576 WP_107925963.1 DUF3267 domain-containing protein -
  C9J31_RS23375 - 4808003..4808434 (-) 432 WP_107951475.1 hypothetical protein -
  C9J31_RS23380 ychF 4808567..4809667 (-) 1101 WP_107951476.1 redox-regulated ATPase YchF -
  C9J31_RS23385 - 4809944..4810144 (-) 201 WP_107925957.1 DUF951 domain-containing protein -
  C9J31_RS23390 - 4810145..4811026 (-) 882 WP_054768477.1 mechanosensitive ion channel family protein -
  C9J31_RS23395 yyaC 4811120..4811752 (+) 633 WP_107925955.1 spore protease YyaC -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 20452.42 Da        Isoelectric Point: 4.9533

>NTDB_id=560145 C9J31_RS23360 WP_054768473.1 4806346..4806915(-) (ssbA) [Lysinibacillus parviboronicapiens strain VT1065]
MINRVVLVGRLTKDPELRYTPNGIASTRFTVAVNRTFSNQQGEKEADFISCVAWRKQAENLANFMKKGSLIGVEGRIQTG
SYEGQDGKRVYTTDVVADSVQFLEPRSGGGAPASNQYGGQSYANSQPSYGGGQPQQQFGGAAPQQGSFGGGSYQQNQPPM
NQPNYTRVDEDPFANSKGPIEVSEDDLPF

Nucleotide


Download         Length: 570 bp        

>NTDB_id=560145 C9J31_RS23360 WP_054768473.1 4806346..4806915(-) (ssbA) [Lysinibacillus parviboronicapiens strain VT1065]
ATGATAAACCGTGTCGTACTAGTTGGAAGACTAACAAAAGATCCCGAGCTACGCTACACACCAAATGGTATTGCGTCTAC
TCGATTTACAGTTGCTGTAAACCGTACATTCTCAAACCAACAAGGTGAAAAAGAAGCAGATTTCATAAGTTGTGTTGCTT
GGCGTAAACAGGCTGAAAACTTAGCGAACTTCATGAAAAAAGGAAGTTTGATTGGAGTAGAAGGTCGTATCCAAACAGGC
AGTTATGAAGGACAAGATGGTAAGCGTGTATATACAACTGATGTTGTGGCAGATAGCGTACAGTTTTTAGAACCTCGTAG
TGGTGGAGGTGCTCCAGCATCTAACCAATACGGTGGACAATCTTACGCAAATAGCCAACCGTCATATGGCGGTGGTCAAC
CACAACAACAGTTTGGTGGCGCAGCGCCTCAGCAAGGTTCGTTTGGCGGCGGTTCTTATCAGCAAAACCAACCACCAATG
AATCAGCCGAACTATACACGTGTAGATGAAGATCCTTTTGCTAACAGCAAGGGACCGATTGAAGTATCAGAGGATGATCT
TCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.026

100

0.55
  ssb Latilactobacillus sakei subsp. sakei 23K

49.223

100

0.503