Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   KAI37_RS22090 Genome accession   NZ_CP073683
Coordinates   5020344..5021297 (-) Length   317 a.a.
NCBI ID   WP_025721924.1    Uniprot ID   -
Organism   Paenibacillus sp. S25     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5015344..5026297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KAI37_RS22065 (KAI37_04477) - 5015691..5016602 (-) 912 WP_220030217.1 aldo/keto reductase -
  KAI37_RS22070 (KAI37_04478) - 5016882..5017625 (-) 744 WP_220030218.1 alpha/beta hydrolase-fold protein -
  KAI37_RS22075 (KAI37_04479) - 5017659..5018639 (-) 981 WP_071643043.1 siderophore ABC transporter substrate-binding protein -
  KAI37_RS22080 (KAI37_04480) - 5018652..5019410 (-) 759 WP_039273792.1 ABC transporter ATP-binding protein -
  KAI37_RS22085 (KAI37_04481) - 5019404..5020354 (-) 951 WP_220030221.1 iron chelate uptake ABC transporter family permease subunit -
  KAI37_RS22090 (KAI37_04482) ceuB 5020344..5021297 (-) 954 WP_025721924.1 ABC transporter permease Machinery gene
  KAI37_RS22095 (KAI37_04483) - 5021627..5022304 (+) 678 WP_220031516.1 response regulator transcription factor -
  KAI37_RS22100 (KAI37_04484) - 5022301..5023218 (+) 918 WP_220030222.1 HAMP domain-containing sensor histidine kinase -
  KAI37_RS22105 (KAI37_04485) - 5023327..5024004 (+) 678 WP_220030224.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34732.72 Da        Isoelectric Point: 9.9012

>NTDB_id=559935 KAI37_RS22090 WP_025721924.1 5020344..5021297(-) (ceuB) [Paenibacillus sp. S25]
MKLRYLILAFLVLAFASVFIGVHDVTPLDVFHLTNDQAQVLLISRFPRLISIIIAGASMSICGLIMQQLTRNRFVSPTTA
GTMDAARLGVLMAIMVFGAAGFWTKMLTAFGFALGGTLIFMKILDKIRFKDPVFIPLVGLMFGGILNSVTTFFAYKYNLI
QGISSWMQGDFSLIMSGRYEMLYLSVPLVALAYIYANRFTIAGMGEDFAANLGVHYKRTVNVGLVIVALVSSVVILTVGT
IPFLGLVVPNLVSMYMGDNLKKSLAHTAILGAVFVLFCDILGRVIIYPYEISVGLTVGVIGSALFLYLLLRRRAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=559935 KAI37_RS22090 WP_025721924.1 5020344..5021297(-) (ceuB) [Paenibacillus sp. S25]
ATGAAATTGCGTTATTTAATACTGGCTTTTCTGGTACTGGCCTTCGCCTCGGTTTTTATCGGTGTTCATGATGTAACTCC
ACTTGATGTGTTCCACTTAACCAACGATCAGGCGCAGGTACTCCTGATTAGCAGATTCCCACGTTTGATCAGTATCATTA
TCGCAGGGGCGAGTATGAGTATCTGTGGGCTCATTATGCAGCAACTTACCCGGAACCGATTTGTATCTCCCACCACTGCG
GGGACGATGGACGCGGCACGATTGGGTGTGCTGATGGCTATTATGGTGTTTGGAGCGGCGGGATTTTGGACGAAGATGCT
GACGGCTTTCGGATTTGCTCTAGGGGGAACACTGATTTTCATGAAAATCCTGGATAAAATCCGTTTCAAGGACCCAGTAT
TTATCCCGCTTGTCGGTTTGATGTTTGGAGGCATTTTAAATTCGGTAACGACCTTTTTTGCTTACAAATACAATCTGATC
CAGGGCATTTCTTCGTGGATGCAGGGGGATTTTTCTCTAATCATGAGTGGTCGCTACGAGATGCTATATCTTAGTGTTCC
TTTGGTTGCGTTGGCGTACATATATGCGAATCGTTTCACAATTGCAGGCATGGGTGAGGATTTTGCGGCCAACTTGGGTG
TACATTACAAGCGCACCGTCAATGTCGGTTTGGTGATCGTGGCTTTGGTATCCTCTGTTGTCATCTTAACCGTTGGGACG
ATTCCCTTTTTAGGGCTGGTTGTACCCAATCTGGTCAGCATGTATATGGGGGATAATCTGAAAAAAAGCCTGGCCCATAC
AGCGATCTTGGGCGCCGTCTTTGTGCTGTTTTGCGACATTTTGGGACGGGTGATCATTTATCCGTATGAAATTTCTGTAG
GGCTTACGGTTGGTGTGATCGGGAGCGCGTTGTTCTTGTATTTGCTGCTGAGGAGAAGGGCCTATGAATCCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.111

99.369

0.508