Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   KAI37_RS12375 Genome accession   NZ_CP073683
Coordinates   2849253..2851016 (+) Length   587 a.a.
NCBI ID   WP_076294742.1    Uniprot ID   -
Organism   Paenibacillus sp. S25     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2844253..2856016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KAI37_RS12350 (KAI37_02497) - 2845238..2846767 (+) 1530 WP_220031379.1 spore germination protein -
  KAI37_RS12355 (KAI37_02498) - 2846748..2847971 (+) 1224 WP_220031380.1 Ger(x)C family spore germination protein -
  KAI37_RS12360 (KAI37_02499) - 2847977..2848207 (+) 231 WP_076294740.1 hypothetical protein -
  KAI37_RS12365 - 2848310..2848456 (+) 147 WP_179085971.1 hypothetical protein -
  KAI37_RS12370 (KAI37_02500) - 2848768..2849178 (+) 411 WP_076294741.1 MarR family transcriptional regulator -
  KAI37_RS12375 (KAI37_02501) rcrP 2849253..2851016 (+) 1764 WP_076294742.1 ABC transporter ATP-binding protein Regulator
  KAI37_RS12380 (KAI37_02502) rcrQ 2851009..2852859 (+) 1851 WP_076294743.1 ABC transporter ATP-binding protein Regulator
  KAI37_RS12385 (KAI37_02503) - 2852980..2853288 (+) 309 WP_025723019.1 hypothetical protein -
  KAI37_RS12390 - 2853735..2853854 (+) 120 WP_256703414.1 hypothetical protein -
  KAI37_RS12395 (KAI37_02504) - 2854224..2854559 (+) 336 WP_220031381.1 ester cyclase -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 64894.20 Da        Isoelectric Point: 7.8021

>NTDB_id=559924 KAI37_RS12375 WP_076294742.1 2849253..2851016(+) (rcrP) [Paenibacillus sp. S25]
MLKIFKYLKKNEWMLVLCSLAFIVVQVWLDLKLPDYMAEITTKLQTEGTPVSELLIPGSYMLFCAVGSMIASIIVGYFAA
KVAAGLAMRLRAMVFDKTLSFSMEEMNNFSTASLITRSTNDVTQIQTVVALGLQVIIKAPILAVWAIVKIADKNWQWTAS
TGAAVAALILMLSVIVVFALPSFQRIQRLTDNLNRVTREHLIGLRVVRAYNADQYQQEKFEQANVELTNTNLFANRLMTM
IGPGMTFIMSGLSVSIYWIGAYLINGAALPDRITLFSNMVVFSSYAMQVVMAFMMVSMIFILMPRASISAKRIMEVLNTE
SSIVNGHETTGEESVMGQVEFRNVSFKYPDAEEAVLRNISFTAKRGETVAFIGATGSGKTSVINLIPRFYDVTEGEVLVD
GVNVRNYNQQALHNKIGYVPQRAVLFNGTVVSNVSYGDNGRAGASEKLVKEAVGIAQGTEFVEKMDGQYQGRISQGGANV
SGGQKQRLSIARAIYRQPEIYIFDDSFSALDYRTDRILRSALKKETGHATTLIVGQRIGTIKDADRIIVLDQGEIVGSGT
HEELMTNCSTYQEIAYSQLSKEELIHG

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=559924 KAI37_RS12375 WP_076294742.1 2849253..2851016(+) (rcrP) [Paenibacillus sp. S25]
ATGCTAAAGATATTCAAATATCTCAAGAAAAATGAATGGATGCTTGTGCTTTGCAGCCTAGCCTTCATCGTTGTGCAGGT
ATGGCTTGATCTGAAGCTACCTGATTATATGGCGGAAATTACGACCAAGTTGCAAACGGAAGGAACGCCTGTGTCCGAAC
TGCTGATTCCCGGCAGTTACATGTTGTTTTGTGCCGTCGGCAGTATGATTGCATCTATTATTGTGGGCTATTTCGCGGCA
AAGGTGGCTGCAGGGCTGGCTATGCGTCTGCGTGCGATGGTCTTTGACAAGACCTTATCCTTTTCGATGGAAGAGATGAA
CAACTTTTCGACGGCAAGCCTCATTACCCGCTCCACGAACGATGTTACGCAGATTCAAACAGTGGTTGCGCTGGGGCTTC
AGGTGATCATCAAGGCACCGATTCTGGCCGTGTGGGCCATTGTGAAGATTGCGGATAAAAACTGGCAGTGGACCGCCTCC
ACAGGAGCGGCCGTGGCTGCTCTGATCCTGATGCTAAGTGTCATTGTTGTTTTCGCTCTTCCAAGTTTCCAGAGAATCCA
GCGTCTCACCGATAATCTGAACAGGGTAACACGTGAGCATCTGATCGGACTTCGGGTAGTACGCGCTTATAATGCAGATC
AGTATCAGCAGGAGAAGTTCGAGCAGGCTAACGTCGAGTTGACGAATACAAACCTGTTTGCGAACCGTTTAATGACGATG
ATTGGCCCAGGTATGACCTTTATTATGTCAGGTCTGAGTGTCTCTATCTATTGGATCGGCGCTTACCTGATTAACGGGGC
GGCCCTACCAGACCGCATCACGCTGTTCTCCAATATGGTCGTATTCTCCTCTTATGCAATGCAGGTGGTTATGGCTTTTA
TGATGGTAAGTATGATATTCATCCTGATGCCTCGTGCCTCGATCTCTGCCAAACGGATCATGGAGGTTTTGAATACCGAA
TCCAGCATCGTTAACGGGCATGAGACGACTGGAGAAGAGAGCGTTATGGGGCAAGTGGAATTCCGTAATGTCAGCTTCAA
ATATCCGGACGCGGAGGAGGCCGTGCTTCGCAACATCAGCTTCACGGCGAAACGAGGCGAGACGGTTGCCTTTATTGGCG
CTACAGGCAGCGGCAAAACCAGCGTGATCAATCTGATTCCCCGTTTCTACGATGTGACCGAGGGAGAGGTACTCGTGGAC
GGTGTGAATGTCAGGAACTATAATCAGCAGGCACTCCATAACAAAATCGGGTATGTTCCTCAGAGAGCTGTACTGTTCAA
CGGTACGGTGGTATCCAACGTTTCGTACGGTGATAACGGAAGGGCAGGAGCTTCGGAGAAACTTGTCAAAGAAGCCGTTG
GTATTGCTCAAGGAACGGAGTTTGTCGAAAAAATGGATGGTCAATATCAGGGTAGAATTTCGCAAGGTGGAGCGAACGTA
TCCGGTGGTCAAAAGCAGCGGCTGTCCATTGCGCGTGCCATCTACCGTCAGCCGGAAATTTATATTTTCGATGATTCCTT
CTCGGCACTAGACTACAGAACAGACCGGATTCTGCGCTCCGCTCTCAAAAAAGAAACCGGCCACGCTACGACACTTATCG
TTGGTCAGCGCATAGGTACGATCAAAGACGCTGATCGGATTATCGTGCTGGACCAGGGAGAGATTGTAGGGAGCGGCACG
CATGAAGAGCTGATGACGAACTGCAGCACCTATCAGGAGATCGCATATTCGCAGCTTTCGAAGGAGGAACTCATACATGG
ATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(356-506)

ABC transporter transmembrane region (ABC_membrane)

(17-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

52.588

100

0.537