Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   KAI37_RS12380 Genome accession   NZ_CP073683
Coordinates   2851009..2852859 (+) Length   616 a.a.
NCBI ID   WP_076294743.1    Uniprot ID   -
Organism   Paenibacillus sp. S25     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2846009..2857859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KAI37_RS12355 (KAI37_02498) - 2846748..2847971 (+) 1224 WP_220031380.1 Ger(x)C family spore germination protein -
  KAI37_RS12360 (KAI37_02499) - 2847977..2848207 (+) 231 WP_076294740.1 hypothetical protein -
  KAI37_RS12365 - 2848310..2848456 (+) 147 WP_179085971.1 hypothetical protein -
  KAI37_RS12370 (KAI37_02500) - 2848768..2849178 (+) 411 WP_076294741.1 MarR family transcriptional regulator -
  KAI37_RS12375 (KAI37_02501) rcrP 2849253..2851016 (+) 1764 WP_076294742.1 ABC transporter ATP-binding protein Regulator
  KAI37_RS12380 (KAI37_02502) rcrQ 2851009..2852859 (+) 1851 WP_076294743.1 ABC transporter ATP-binding protein Regulator
  KAI37_RS12385 (KAI37_02503) - 2852980..2853288 (+) 309 WP_025723019.1 hypothetical protein -
  KAI37_RS12390 - 2853735..2853854 (+) 120 WP_256703414.1 hypothetical protein -
  KAI37_RS12395 (KAI37_02504) - 2854224..2854559 (+) 336 WP_220031381.1 ester cyclase -
  KAI37_RS12400 (KAI37_02505) - 2854783..2856174 (-) 1392 WP_220031382.1 PLP-dependent aminotransferase family protein -
  KAI37_RS12405 (KAI37_02506) azlC 2856282..2857013 (+) 732 WP_220031383.1 azaleucine resistance protein AzlC -
  KAI37_RS12410 (KAI37_02507) - 2856994..2857326 (+) 333 WP_023988622.1 branched-chain amino acid transporter permease -

Sequence

Protein


Download         Length: 616 a.a.        Molecular weight: 67867.41 Da        Isoelectric Point: 6.2786

>NTDB_id=559925 KAI37_RS12380 WP_076294743.1 2851009..2852859(+) (rcrQ) [Paenibacillus sp. S25]
MDKNEHTVDSQQMKMNQGGPMGKGTAGGKGAGEKANNFKKTIRQLVSYSKAYVPMIVLAMVLALVGSTLNVIGPDKLSDI
ANLIQEGIVTGIDVSAVQKIVLVLALLYGFGLIFNYFQGFITATVSQRLTKKMRTELSRKIDHMPLKYFDSTSYGNVLSR
VSNDVDTIGQTLNNSLGTLVSALATFVGALIMMLYTNWIMTVTGIVATLIGFCLMSVIMKHSQKYFVAQQAELGQINGHI
EETYAGHNVVKVYNGEQAAKEVFHGINSRLYTNAWKSQFMSGLMMPVMMFIGNFGYVAVCVVGALLVNQQTISIGTIVAF
MVYIRLFTQPLSQLAQAATNLQSAAAASERVFEFLGEEELADERHKTTKLDTAKGEVEFKHVRFGYNTDRMIIKDFSMKA
EAGQKIAIVGPTGAGKTTLVNLLMRFYELNDGEIYIDGTPISQLTRENIHELFCMVLQDTWLFEGTIRDNIVFSKDHVTD
EQVETACKAVGLHSFIKTLPQGYDTVLDDKANLSAGQKQLITIARAMIEDSPMLILDEATSSVDTRTELLIQQAMDQLTV
GKTSFVIAHRLSTIKNADLILVMKDGDIIEMGNHEELLAKGGFYADLYNSQFEHAS

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=559925 KAI37_RS12380 WP_076294743.1 2851009..2852859(+) (rcrQ) [Paenibacillus sp. S25]
ATGGATAAGAATGAACACACCGTCGATAGCCAGCAAATGAAAATGAATCAGGGAGGTCCCATGGGTAAAGGCACTGCGGG
GGGCAAGGGTGCTGGTGAAAAAGCAAATAATTTTAAAAAGACCATCAGACAGCTTGTATCCTACAGCAAGGCCTATGTGC
CTATGATTGTACTAGCTATGGTACTGGCCCTGGTCGGCTCCACCCTCAACGTGATTGGCCCGGATAAGCTCAGTGATATT
GCCAACCTGATTCAGGAAGGAATCGTAACCGGGATTGATGTAAGTGCTGTTCAGAAGATTGTTCTTGTATTGGCGCTTTT
ATATGGATTTGGTCTTATCTTCAACTATTTCCAGGGCTTCATTACAGCAACCGTCTCACAGCGTCTTACAAAGAAGATGC
GGACAGAGCTGTCTCGAAAAATCGATCATATGCCTTTGAAGTATTTTGACTCTACGAGTTACGGTAATGTGCTTAGCCGC
GTAAGCAACGATGTCGATACCATCGGACAAACGTTAAACAACAGTCTCGGCACGCTTGTCAGTGCGCTGGCTACCTTCGT
GGGCGCCTTGATTATGATGCTTTATACGAACTGGATCATGACCGTTACCGGAATTGTAGCTACGCTGATCGGCTTTTGTC
TGATGAGCGTGATTATGAAGCATTCACAGAAATACTTTGTAGCACAGCAAGCGGAGCTTGGCCAGATCAACGGTCATATT
GAAGAAACCTATGCTGGTCATAACGTAGTCAAGGTATATAACGGGGAACAAGCAGCCAAGGAAGTGTTTCATGGCATTAA
CAGCCGCCTATATACAAATGCATGGAAGTCCCAGTTCATGTCTGGTCTGATGATGCCAGTCATGATGTTCATTGGGAATT
TTGGTTATGTCGCGGTCTGTGTTGTGGGAGCTTTGCTGGTCAACCAACAGACTATAAGCATTGGAACTATTGTCGCCTTC
ATGGTGTATATTCGACTGTTTACACAGCCCTTGTCGCAGCTGGCACAGGCCGCAACCAATCTGCAATCCGCCGCCGCCGC
CAGTGAACGTGTATTTGAATTTCTGGGTGAAGAAGAATTGGCAGATGAGCGTCACAAGACCACAAAGCTGGACACCGCCA
AAGGGGAAGTCGAATTCAAACATGTCCGTTTTGGCTATAATACAGACCGTATGATTATCAAGGACTTCTCCATGAAAGCT
GAAGCTGGTCAGAAAATTGCCATTGTCGGTCCGACAGGCGCCGGTAAGACCACGCTCGTGAATTTGCTCATGAGGTTTTA
TGAGCTGAACGATGGAGAAATCTACATTGACGGAACCCCGATTAGCCAATTGACGCGTGAGAATATTCATGAATTATTCT
GTATGGTGCTTCAGGATACGTGGCTGTTCGAAGGAACGATTCGTGACAATATCGTCTTTTCCAAAGATCATGTTACCGAT
GAGCAGGTGGAAACTGCATGTAAAGCGGTGGGGCTGCACAGCTTCATTAAAACACTGCCGCAGGGCTATGATACAGTGCT
GGACGACAAAGCCAATCTCTCTGCCGGTCAAAAGCAATTGATTACCATTGCAAGAGCGATGATTGAAGATTCACCCATGC
TCATTCTGGATGAGGCCACAAGCTCGGTTGATACGCGTACGGAATTGCTGATTCAACAAGCGATGGACCAGCTGACTGTG
GGGAAAACCTCCTTTGTGATTGCTCACCGACTTTCGACGATCAAGAATGCGGATCTGATTCTGGTCATGAAGGATGGTGA
CATTATCGAAATGGGTAACCATGAGGAATTGCTGGCTAAAGGCGGCTTCTATGCCGATCTATACAACAGTCAGTTTGAAC
ATGCATCCTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(394-541)

ABC transporter transmembrane region (ABC_membrane)

(58-331)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

55.979

93.669

0.524