Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   SCSC_RS07410 Genome accession   NZ_AP014647
Coordinates   1503877..1504335 (-) Length   152 a.a.
NCBI ID   WP_006270314.1    Uniprot ID   -
Organism   Streptococcus constellatus subsp. constellatus strain CCUG 24889     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1498877..1509335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCSC_RS07390 (SCSC_1518) - 1499513..1499833 (-) 321 WP_003031767.1 PTS cellobiose transporter subunit IIA -
  SCSC_RS07395 (SCSC_1519) - 1499844..1500158 (-) 315 WP_006270249.1 PTS cellobiose transporter subunit IIB -
  SCSC_RS07400 (SCSC_1520) rcrQ 1500368..1502128 (-) 1761 WP_006270213.1 ABC transporter ATP-binding protein Regulator
  SCSC_RS07405 (SCSC_1521) rcrP 1502118..1503884 (-) 1767 WP_006270248.1 ABC transporter ATP-binding protein Regulator
  SCSC_RS07410 (SCSC_1522) rcrR 1503877..1504335 (-) 459 WP_006270314.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  SCSC_RS07415 (SCSC_1523) - 1504506..1505693 (-) 1188 WP_006270250.1 NADH-dependent flavin oxidoreductase -
  SCSC_RS07420 (SCSC_1524) - 1505960..1506370 (-) 411 WP_006268326.1 peptide deformylase -
  SCSC_RS07425 (SCSC_1525) scrK 1506436..1507335 (-) 900 WP_006270296.1 fructokinase ScrK -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17679.66 Da        Isoelectric Point: 9.5065

>NTDB_id=55985 SCSC_RS07410 WP_006270314.1 1503877..1504335(-) (rcrR) [Streptococcus constellatus subsp. constellatus strain CCUG 24889]
MEKPLLEFKRFGRKTHLMIQKIAKERGIEFMAGPQGQVLHFVNHREDCGKMTFIKDIEQELGITKSVASNLMKRMVKNGL
IYLEVSEADKRAKIIRLTSESKERMNKIRDFFDEMDRCLLTGISEEDLVTFFQIMGRFYQNIEKIGKGEANG

Nucleotide


Download         Length: 459 bp        

>NTDB_id=55985 SCSC_RS07410 WP_006270314.1 1503877..1504335(-) (rcrR) [Streptococcus constellatus subsp. constellatus strain CCUG 24889]
ATGGAAAAACCATTATTGGAATTCAAGCGATTTGGACGGAAGACACATCTGATGATTCAAAAAATTGCCAAAGAGCGAGG
GATTGAATTTATGGCGGGCCCACAAGGGCAAGTATTGCATTTTGTGAATCATCGAGAAGATTGTGGCAAGATGACCTTTA
TTAAAGATATTGAGCAGGAGTTGGGAATTACCAAGTCAGTTGCTAGTAATTTAATGAAGCGAATGGTTAAAAATGGCTTG
ATTTATCTGGAAGTGAGTGAAGCAGACAAACGCGCTAAGATTATTCGTTTGACATCGGAATCAAAAGAGCGCATGAATAA
AATTCGGGATTTCTTTGATGAGATGGATCGCTGCTTATTGACTGGCATTTCAGAAGAAGATTTGGTGACTTTTTTTCAAA
TAATGGGGCGATTTTATCAGAATATTGAAAAAATAGGAAAAGGAGAAGCGAATGGTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

42.361

94.737

0.401

Multiple sequence alignment