Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   C663_RS05700 Genome accession   NC_020244
Coordinates   1121772..1122350 (+) Length   192 a.a.
NCBI ID   WP_015483050.1    Uniprot ID   -
Organism   Bacillus subtilis XF-1     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1116772..1127350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C663_RS05680 (C663_1062) hemAT 1117283..1118581 (-) 1299 WP_015483047.1 heme-based aerotactic transducer HemAT -
  C663_RS05685 (C663_1063) yhfW 1118720..1120249 (-) 1530 WP_015483048.1 FAD-dependent oxidoreductase -
  C663_RS05690 (C663_1064) yhxC 1120361..1121218 (+) 858 WP_041517781.1 SDR family oxidoreductase -
  C663_RS05695 (C663_1065) yhzC 1121246..1121479 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  C663_RS05700 (C663_1066) comK 1121772..1122350 (+) 579 WP_015483050.1 competence transcription factor ComK Regulator
  C663_RS05705 (C663_1067) yhxD 1122397..1123296 (-) 900 WP_015483051.1 SDR family oxidoreductase -
  C663_RS05710 yhjA 1123514..1123784 (+) 271 Protein_1111 excalibur calcium-binding domain-containing protein -
  C663_RS05715 (C663_1069) yhjB 1123828..1125297 (-) 1470 WP_015383277.1 sodium:solute symporter -
  C663_RS05720 (C663_1070) yhjC 1125294..1125494 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  C663_RS05725 (C663_1071) - 1125693..1126064 (-) 372 WP_015383278.1 hypothetical protein -
  C663_RS05730 (C663_1072) yhjE 1126216..1126839 (+) 624 WP_010886465.1 VTT domain-containing protein -
  C663_RS05735 (C663_1073) lepB 1126841..1127347 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22388.59 Da        Isoelectric Point: 7.2635

>NTDB_id=55984 C663_RS05700 WP_015483050.1 1121772..1122350(+) (comK) [Bacillus subtilis XF-1]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
SVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=55984 C663_RS05700 WP_015483050.1 1121772..1122350(+) (comK) [Bacillus subtilis XF-1]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTTGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
AGCGTTCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

98.958

100

0.99

Multiple sequence alignment